CF417888

Overview
NameCF417888
Unique NameCF417888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417888 vs. ExPASy Swiss-Prot
Match: PAO_MAIZE (Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:  100 QHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSG 447
            Q  E + P  N++ VTVTDEESRRIEQQS+++TKAEIMQVL+KMF  GK +P+   +L+P+WWS+R YKG++SNWP G   + Y  L+ P GR+YF GEHT+  Y GYV GAY SG
Sbjct:  361 QEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSG 475
[Close]
BLAST of CF417888 vs. ExPASy Swiss-Prot
Match: PAO1_ARATH (Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:  100 QHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGTFRSPS 465
            QH+EN  PG N++ VT+T+E+S+R+E QS+++T  E M VL+ MFG    IP    +L+P+WW+NR  +GSYSN+P         +++ P GRI+F GEHT+  + GYV G Y +G   S S
Sbjct:  309 QHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFG--ATIPYATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGYLAGIDTSKS 428
The following BLAST results are available for this feature:
BLAST of CF417888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAO_MAIZE7.270e-3658.62Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1[more]
PAO1_ARATH2.344e-2645.08Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-818 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417888 ID=CF417888; Name=CF417888; organism=Citrus sinensis; type=EST; length=684bp
TCACACTCATTTTGTTGCTTTCATTATTTGCTCTTAATACTCTCTAAAAT
TTAAATAATTAATGATACATAATAAAAAGTTGAATGAATTATATGAATGC
AGCATTTGGAGAATGAACTGCCAGGAGAAAACATGATATTTGTGACCGTA
ACAGATGAAGAATCAAGGAGGATAGAGCAACAATCAGAAAAAAAGACAAA
GGCTGAGATTATGCAGGTCCTTAAGAAAATGTTTGGTAATGGGAAACAAA
TTCCCGAGCCAGACACAATGCTTATTCCAAAATGGTGGTCCAATAGGTTG
TACAAGGGGAGCTACTCAAATTGGCCCAATGGTTATACTCTTCATAGCTA
TCATGATTTACAGCAACCATTTGGTAGAATTTACTTCGCAGGGGAGCATA
CTAATTCTACATATTTAGGATATGTAGATGGTGCTTATTTTTCAGGTACT
TTTCGCTCTCCTTCTGATTCTTTATACCCATTACTGGGCAGAGCTACATA
AGATTTTGATTCGGAAAATTATTAAAAAGACACAACACCGATAGAGCACT
GATAGAAATGGTAATGTATAAGTGTTAGTTGACCCTATTTTTCATTTCAA
CATTCTGTCAAATTTTATATTTGAATATCATTGCCCTTCTGATTCTATCG
AGTCAGAATGAAAGCACGAGAAACTTAAGTCGGA
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