CF417897

Overview
NameCF417897
Unique NameCF417897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 3.454e-117
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSGILQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPDNI++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.005e-116
Identity = 209/217 (96.31%), Postives = 217/217 (100.00%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSGILQQLDYGLVECQ+LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VNVEKE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   80 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWL 296
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 1.714e-116
Identity = 209/217 (96.31%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 2.924e-116
Identity = 208/217 (95.85%), Postives = 216/217 (99.54%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLRRQSLRPDNI++FVLDEADEMLSRGFKDQIYDIFQLLP KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VN++KE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   76 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWL 292
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.818e-116
Identity = 209/217 (96.31%), Postives = 216/217 (99.54%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFD++RRQSLRPDNI++FVLDEADEMLSRGFKDQIYDIFQLLP KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VNVEKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   80 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWL 296
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.818e-116
Identity = 209/217 (96.31%), Postives = 216/217 (99.54%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSGILQQLDY L++CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 8.506e-116
Identity = 207/217 (95.39%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD++TLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 8.506e-116
Identity = 207/217 (95.39%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD++TLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 2.475e-115
Identity = 206/217 (94.93%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMN+PVRILVKRD++TLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
[Close]
BLAST of CF417897 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 3.232e-115
Identity = 206/217 (94.93%), Postives = 215/217 (99.08%), Query Frame = 2 
Query:    2 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 652
            DVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM+KPVRILVKRD++TLEGIKQF+VNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL
Sbjct:   79 DVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
The following BLAST results are available for this feature:
BLAST of CF417897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF411_TOBAC3.454e-11797.24Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A3_ORYSJ1.005e-11696.31Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A2_NICPL1.714e-11696.31Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF4A_MAIZE2.924e-11695.85Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A_WHEAT3.818e-11696.31Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A9_TOBAC3.818e-11696.31Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A7_TOBAC8.506e-11695.39Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF410_TOBAC8.506e-11695.39Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF413_TOBAC2.475e-11594.93Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
IF414_TOBAC3.232e-11594.93Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-827 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417897 ID=CF417897; Name=CF417897; organism=Citrus sinensis; type=EST; length=654bp
TGATGTAATTCAACAAGCACAGTCTGGAACTGGAAAAACTGCAACTTTTT
GCTCCGGAATTTTGCAGCAGCTTGATTATGGTTTAGTTGAATGCCAAGCA
TTGGTTCTTGCTCCAACTAGGGAACTGGCGCAACAGATTGAGAAGGTTAT
GCGAGCACTTGGTGACTATCTTGGTGTCAAAGTGCATGCATGTGTAGGTG
GAACCAGTGTCCGTGAAGATCAACGCATTCTTTCAAGCGGTGTACATGTT
GTAGTTGGTACACCTGGTCGTGTGTTTGACATGTTGCGGAGGCAATCTCT
TCGCCCAGATAACATCAGGATCTTTGTGCTGGATGAGGCTGATGAAATGC
TGTCACGAGGTTTCAAAGACCAGATCTATGATATCTTCCAGTTGCTACCC
CCAAAGATTCAAGTTGGGGTTTTCTCTGCCACAATGCCACCAGAGGCCCT
TGAAATCACAAGGAAGTTCATGAATAAACCGGTTAGGATTCTGGTGAAAC
GTGATGAGCTTACCCTAGAAGGTATCAAGCAATTTCATGTTAATGTTGAA
AAGGAGGAATGGAAGCTTGAGACACTATGCGATCTGTACGAGACTTTGGC
AATCACCCAAAGTGTCATCTTTGTGAACACCCGGCGTAAGGTAGATTGGC
TGAC
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