CF417902

Overview
NameCF417902
Unique NameCF417902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417902 vs. ExPASy Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.126e-51
Identity = 107/173 (61.85%), Postives = 124/173 (71.68%), Query Frame = 3
Query:   33 EKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAERE 551
            +K E PV+        T  E E N LLD+LGPRF +WW    LPVDADLLP  V G KTP+RL P G+R  L + E+T LR+LAR LP HFALGRN   QGLA AILKLWEKSL+AKIAVK GIQNTNN+ MA  LK LTGGT++ RNK +I+LYRGKDFLP  VA  + +RE
Sbjct:  288 QKDEEPVK-------GTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQRE 453          
BLAST of CF417902 vs. ExPASy Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.040e-50
Identity = 103/174 (59.20%), Postives = 123/174 (70.69%), Query Frame = 3
Query:   30 DEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAERE 551
            D+K + P++        T  E E N LLDSLGPRF +WW    LPVDADLLP  V  +KTPFR  P G+R  L + E+T LR+ AR LP HF LGRN   QGLA AILKLWEKSL+AK+AVK GIQNTN++ MA  LK LTGGT++ RNK YI++YRGKDFLP  VA ++ ERE
Sbjct:  289 DDKDDKPIK-------GTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERE 455          
BLAST of CF417902 vs. ExPASy Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 89/155 (57.42%), Postives = 111/155 (71.61%), Query Frame = 3
Query:   90 EAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQ 554
            E E + LLD LGPR+ +WW     PVDADLLP  V+GY TP R  P   R++LT+ E+T LR +A+ LP HF LGRN   QGLA AI+KLWEK ++AKIA+K G  NTNN+ MA+EL+ LTGG L+ RNK+ IVLYRGKDFL   VA  + +RE+
Sbjct:  307 EREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRER 461          
The following BLAST results are available for this feature:
BLAST of CF417902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CRS1_MAIZE6.126e-5161.85Chloroplastic group IIA intron splicing facilitato... [more]
CRS1_ORYSJ3.040e-5059.20Chloroplastic group IIA intron splicing facilitato... [more]
CRS1_ARATH1.462e-4457.42Chloroplastic group IIA intron splicing facilitato... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-832 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417902 ID=CF417902; Name=CF417902; organism=Citrus sinensis; type=EST; length=687bp
CTACTGACGGTTCAACTGCGAGAAGTGTCGATGAAAAGAGTGAGGTACCT
GTCAGGATTTTGGACCATTCTAAGCCAATGACTGAAGAGGAAGCTGAATG
TAACAGCCTACTAGATAGTCTAGGTCCTCGTTTCCAGGAGTGGTGGGGCA
CAGGGATACTCCCAGTTGATGCTGATTTACTTCCTCCAAAAGTTGATGGT
TACAAGACACCTTTCAGGCTTCTTCCTACTGGAATGCGATCTCGACTGAC
CAATGCAGAAATGACTGATTTAAGGAGACTTGCCAGATCACTTCCTTGTC
ATTTTGCCCTTGGAAGGAACAGAAATCATCAAGGTTTAGCTGTTGCTATA
CTTAAACTTTGGGAGAAAAGCCTTGTTGCAAAGATTGCTGTAAAGCGGGG
TATCCAGAATACAAATAACAAACTAATGGCTGAGGAGCTGAAGAGCTTAA
CAGGAGGCACCTTACTTCAAAGAAACAAGTTTTACATTGTTTTATACCGT
GGGAAAGATTTCCTTCCACCAAATGTTGCTTCTGCTTTGGCTGAAAGAGA
GCAATGTGCGAAACAGGATCCAAGATGTCGAAGAAAAAGTGCGGAGTAAA
ACACTGGANGCAACTCCGTCAGGTGAAACTGAAGGACAGGCACCTGCAGG
TACTTTAGCTGAGTTTTATGAGGCTCAAAAACGCTGG
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