CF417916 | Citrus Genome Database

Overview


Name	CF417916
Unique Name	CF417916
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	434

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.291e-38
Identity = 38/48 (79.17%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            GR  E  DPLY  GSFDPLGL DDPE FA LK KEIKNGRLAMFSMFG
Sbjct:  178 GRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFG 225

HSP 2 Score: 71.2478 bits (173), Expect = 4.291e-38
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HL DPVNNNAWAY TNFVPGK
Sbjct:  226 FFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

HSP 3 Score: 48.9062 bits (115), Expect = 4.291e-38
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWACQVVLMGAV GY +AGG LG
Sbjct:  156 ILAIWACQVVLMGAVEGYHVAGGRLG 181

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.905e-37
Identity = 39/49 (79.59%), Postives = 39/49 (79.59%), Query Frame = 2

Query:   65 EGRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            EG   E  D LYP GSFDPLGLA DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 EGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFG 227

HSP 2 Score: 71.2478 bits (173), Expect = 5.905e-37
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  228 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 3 Score: 45.4394 bits (106), Expect = 5.905e-37
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAG-GPLG 78
            ILAIWA QV+LMGAV GYR+AG GPLG
Sbjct:  157 ILAIWATQVILMGAVEGYRVAGEGPLG 183

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.905e-37
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 66.6254 bits (161), Expect = 5.905e-37
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ DPV NNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 3 Score: 50.447 bits (119), Expect = 5.905e-37
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWACQVVLMG V GYR+ GGPLG
Sbjct:  157 ILAIWACQVVLMGFVEGYRVGGGPLG 182

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.691e-36
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  151 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 198

HSP 2 Score: 68.9366 bits (167), Expect = 1.691e-36
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWAY TNFVPGK
Sbjct:  199 FFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 3 Score: 46.595 bits (109), Expect = 1.691e-36
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWA QVVLMG V GYR+ GGPLG
Sbjct:  129 ILAIWASQVVLMGFVEGYRVGGGPLG 154

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.846e-36
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 68.5514 bits (166), Expect = 2.846e-36
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

HSP 3 Score: 46.2098 bits (108), Expect = 2.846e-36
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILA+WA QVVLMG + GYR+ GGPLG
Sbjct:  157 ILAVWASQVVLMGLIEGYRVGGGPLG 182

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.697e-36
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D LYP GSFDPLGLA DPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228

HSP 2 Score: 71.2478 bits (173), Expect = 3.697e-36
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  229 FFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 3 Score: 45.4394 bits (106), Expect = 3.697e-36
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAG-GPLG 78
            ILAIWA QV+LMGAV GYR+AG GPLG
Sbjct:  158 ILAIWATQVILMGAVEGYRVAGNGPLG 184

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.697e-36
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D LYP GSFDPLGLA DPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228

HSP 2 Score: 71.2478 bits (173), Expect = 3.697e-36
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  229 FFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 3 Score: 45.4394 bits (106), Expect = 3.697e-36
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAG-GPLG 78
            ILAIWA QV+LMGAV GYR+AG GPLG
Sbjct:  158 ILAIWATQVILMGAVEGYRVAGNGPLG 184

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.806e-36
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 67.0106 bits (162), Expect = 4.806e-36
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWA+ TNFVPGK
Sbjct:  227 FFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 3 Score: 46.9802 bits (110), Expect = 4.806e-36
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWA QVVLMG V GYR+ GGPLG
Sbjct:  157 ILAIWAAQVVLMGFVEGYRVGGGPLG 182

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.009e-35
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDP+ FA LK KE+KNGRLAMFSMFG
Sbjct:  177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 224

HSP 2 Score: 68.5514 bits (166), Expect = 3.009e-35
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWAY TNFVPGK
Sbjct:  225 FFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 3 Score: 46.595 bits (109), Expect = 3.009e-35
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWA QVVLMG V GYR+ GGPLG
Sbjct:  155 ILAIWAVQVVLMGFVEGYRVGGGPLG 180

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.009e-35
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  D +YP G+FDPLGLADDP+ FA LK KE+KNGRLAMFSMFG
Sbjct:  177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 224

HSP 2 Score: 68.5514 bits (166), Expect = 3.009e-35
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWAY TNFVPGK
Sbjct:  225 FFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 3 Score: 46.595 bits (109), Expect = 3.009e-35
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWA QVVLMG V GYR+ GGPLG
Sbjct:  155 ILAIWAVQVVLMGFVEGYRVGGGPLG 180

The following BLAST results are available for this feature:

BLAST of CF417916 vs. ExPASy Swiss-Prot

BLAST of CF417916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB48_MAIZE	4.291e-38	79.17	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB21_SINAL	5.905e-37	79.59	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB24_SOLLC	5.905e-37	77.08	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB25_SOLLC	1.691e-36	77.08	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB23_TOBAC	2.846e-36	77.08	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB22_ARATH	3.697e-36	77.08	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ARATH	3.697e-36	77.08	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB26_PETSP	4.806e-36	77.08	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB23_ORYSJ	3.009e-35	70.83	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	3.009e-35	70.83	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-846 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417916 ID=CF417916; Name=CF417916; organism=Citrus sinensis; type=EST; length=434bp
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGANGG
TTACAGAATTGCTGGAGGGCCGCTCGGCTGAANTGACTGACCCATTGTAC
CCACGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGANCTCAAGGNTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGACTTCTTCGTTCAGGCCATTGTCACCGGCAANGGACCGNT
ANAGAACTTGNNCNACCACTTGGCCGACCCTGTNAACAACAATGCCTGGG
CCTACNCCACCAACTTTGTCCCCGGAAAGNGAGCTTCNGNTGATAACNTT
AGNANCNTGGAAATTGGAATTGANAGTGATTGGTTATTGATGTGACTCTA
TTTCAACTTGCAAAACATGTGAATTATGTAATGT