CF417919

Overview
NameCF417919
Unique NameCF417919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T1841_DICDI (Transmembrane protein 184 homolog DDB_G0284525 OS=Dictyostelium discoideum GN=tmem184A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  200 ESVPFFYIFIAF--LCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWG 475
            +SVP  Y   A   L  + AT L+   IY+HL  YT+P +QRYIVRI+FM+P++A+ S LSL+     +YF  +R+ YEA+V+Y F +LC+++G
Sbjct:   44 DSVPALYAMFALASLFVLLATILSAHLIYKHLKYYTQPDHQRYIVRIVFMIPIYAIYSLLSLLLHNYQVYFALLRDCYEAYVLYMFFALCVSYG 137          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  200 ESVPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVVA 646
            +++  F+++ A L T          IY HL  Y+ P  QR+IVRI+F+VP++A  S+LSL+F    +  +YF ++R+ YEA+VIYNFLSLC  +        ++ +    ++ C+     L   T  +G L     Q  +QF ++KP++ V+
Sbjct:   47 QAISGFFVWTALLITC-------HQIYMHLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEAFVIYNFLSLCYEYLGGESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGFLR-FCKQATLQFCVVKPLMAVS 190          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  251 ATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVV 643
            A  L    IY HL +YT P  QRYI+R++ +VP++A  S+LSL+     +  +YF+S+R+ YEA+VIY+FLSLC  +        A+ +    K+ C+     L   T  +G L     Q  +QF ++KP++ V
Sbjct:   66 ALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLR-FCKQATLQFCLVKPVMAV 198          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  275 IYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVV 643
            IY HL +YT P  QRYI+R++F+VP++A  S+LSL+     +  IYF+S+R+ YEA+VIY+FLSLC  +        A+ +    +  C      L   T  +G L     Q  +QF I+KPI+ +
Sbjct:   64 IYLHLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLLLLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLGGESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLR-FCKQATLQFCIVKPIMAL 188          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T1843_DICDI (Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  227 IAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAW 472
            +A +C+  A  L+ + IY+HL NYT P  Q+YIVRI+ MVP+++V S+LSL F E ++YF+ +R+ YEA+V+Y F SL +A+
Sbjct:    4 VAGVCSGVAILLSFYLIYKHLRNYTNPELQKYIVRILIMVPIYSVDSWLSLRFVELSLYFDVVRDTYEAYVLYCFFSLIVAY 85          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  200 ESVPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVVA 646
            +++  F+++ A L T          IY HL  Y+ P  QRYIVRI+F+VP++A  S+LSL+F    +  +YF ++R+ YEA VIYNFLSLC  +        ++ +    ++ C+     L   T  +G L     Q  +QF ++KP++ V+
Sbjct:   47 QAISGFFVWTALLITC-------HQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLR-FCKQATLQFCVVKPLMAVS 190          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  200 ESVPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVVA 646
            +++  F+++ A L T          IY HL  Y+ P  QRYIVRI+F+VP++A  S+LSL+F    +  +YF ++R+ YEA VIYNFLSLC  +        ++ +    ++ C+     L   T  +G L     Q  +QF ++KP++ V+
Sbjct:   47 QAISGFFVWTALLITC-------HQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLR-FCKQATLQFCVVKPLMAVS 190          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184C_XENTR (Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 47/113 (41.59%), Postives = 77/113 (68.14%), Query Frame = 2
Query:  131 LETV*LIVGLNL-IC*LKKKEMGGESVPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCL 466
            L  V LIVG+ + I  L+K E+G  +  +F   I  L TI    ++++ I +HL++YT+P  Q+ I+RI++MVP+++V S+++L +P+ AIY ++ RE YEA+VIYNF+   L
Sbjct:   19 LYIVGLIVGVPICIWKLQKMEVGVHTKAWFIAGIFVLMTI---PISLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWIALKYPDIAIYVDTCRECYEAYVIYNFMIFLL 128          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184C_XENLA (Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 45/108 (41.67%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  146 LIVGLNL-IC*LKKKEMGGESVPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCL 466
            LIVG+ + I  L+K E+G  +  +F   I  L TI    ++++ I +HL++YT+P  Q+ I+RI++MVP+++V S+++L +P+ AIY ++ RE YEA+VIYNF+   L
Sbjct:   24 LIVGVPICIWKLQKMEVGVHTKAWFIAGIFVLMTI---PISLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWIALKYPDIAIYVDTCRECYEAYVIYNFMIFLL 128          
BLAST of CF417919 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 42/126 (33.33%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  275 IYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVF---PERAIYFNSIREVYEAWVIYNFLSLCLAWGWWSWCSCAKFKRSGTKAICVSDDMLLASCTTGMGVLSGDASQGCVQFVILKPILVV 643
            IY HL +YT P  QR+++R++F+VP++A  S+LSL+        +YF+S+R+ YEA+VIY+FL+LC  +        A+ +    ++ C      L   +  +  L     Q  +QF I+KP++ +
Sbjct:   77 IYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLLLLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLR-FCKQATLQFCIVKPVMAL 201          
The following BLAST results are available for this feature:
BLAST of CF417919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
T1841_DICDI1.049e-1745.74Transmembrane protein 184 homolog DDB_G0284525 OS=... [more]
T184B_MOUSE8.879e-1733.55Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]
T184A_HUMAN1.160e-1636.57Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184A_BOVIN1.514e-1638.89Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
T1843_DICDI2.583e-1648.78Transmembrane protein 184 homolog DDB_G0279555 OS=... [more]
T184B_HUMAN3.374e-1634.21Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN3.374e-1634.21Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184C_XENTR3.730e-1541.59Transmembrane protein 184C OS=Xenopus tropicalis G... [more]
T184C_XENLA4.872e-1541.67Transmembrane protein 184C OS=Xenopus laevis GN=tm... [more]
T184A_MOUSE9.188e-1433.33Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-849 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417919 ID=CF417919; Name=CF417919; organism=Citrus sinensis; type=EST; length=647bp
TTTCCCTTTACTCAATTCTCTCTCTCTCTTCCCCACTCTAAACCTGCTTC
TAGGGTTAGGGCAAATTACTTCGATTTTTTTTTTGGTTTTTTCCAATCAA
ATGTTCAGCTTCGATCGTACCCATTTAAGACTGGAAACTGTCTAATTAAT
CGTGGGTTTGAATTTGATTTGTTAACTCAAGAAAAAAGAAATGGGTGGTG
AATCGGTGCCCTTTTTCTATATCTTCATAGCATTCTTGTGCACCATTGGA
GCCACTTCGTTGGCCATCTTTCACATCTACAGACACCTCTTGAATTACAC
GGAGCCTACTTATCAGAGATACATCGTTCGAATCATCTTCATGGTCCCAC
TTTTTGCGGTGATGTCTTTCTTGTCACTTGTTTTTCCAGAACGTGCAATC
TACTTCAATTCCATTCGAGAAGTTTATGAAGCTTGGGTAATATATAATTT
CCTATCTTTGTGCCTGGCATGGGGTTGGTGGTCCTGGTGCAGTTGTGCTA
AGTTTAAGCGGTCGGGTACTAAAGCCATCTGTGTGTCTGATGACATGTTG
CTTGCCTCCTGTACCACTGGGATGGGCGTTTTATCAGGAGATGCAAGCCA
GGGTTGTGTGCAGTTTGTGATTCTGAAGCCTATCTTGGTTGTTGCTA
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