CF417958

Overview
NameCF417958
Unique NameCF417958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42
Identity = 94/192 (48.96%), Postives = 121/192 (63.02%), Query Frame = 2
Query:  158 CFRKDESETLSENVEQYD-----------------LVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGG--SQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFT-PVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILLG 673
            C RKD   T SE  ++ D                 LV +D +   +++ LLKASA++LG +G  I+YK VLEDG   AVRRLGE G   +RFK+F+  + AIGK+ H N+V L  +YW  DEKL+IYD++PNGSL    + K G  S    +PW  R+KI KGIA+GL YLHE   KK+VHG+LKPSNILLG
Sbjct:  398 CLRKDPETTPSEEEDEDDEDEESGYNANQRSGDNKLVTVDGEKEMEIETLLKASAYILGATGSSIMYKAVLEDGRVFAVRRLGENGLSQRRFKDFEPHIRAIGKLVHPNLVRLCGFYWGTDEKLVIYDFVPNGSLVNPRYRKGGGSSSPYHLPWETRLKIAKGIARGLAYLHE---KKHVHGNLKPSNILLG 586          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 73/145 (50.34%), Postives = 105/145 (72.41%), Query Frame = 2
Query:  236 AFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            +FDL++LL+ASA VLGK  +G  YK VLE+G T+ V+RL +  + + KEF+T++E +GKI+H N++ LRAYY+S DEKLL++D++P GSL+  LHG  G    TP+ W  R++I    A+GL +LH  +  K VHG++K SNILL
Sbjct:  343 SFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVMASK-KEFETQMEVVGKIKHPNVIPLRAYYYSKDEKLLVFDFMPTGSLSALLHGSRGS-GRTPLDWDNRMRIAITAARGLAHLHVSA--KLVHGNIKASNILL 483          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 80/165 (48.48%), Postives = 107/165 (64.85%), Query Frame = 2
Query:  203 QYDLVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGG--SQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLA---TALHGKPGMVSFT----PVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            Q  LV +D +   DLD LLKASA++LG +G GIVYK VLE+G   AVRR+      + + KEF+ EV AI K+RH N+V +R + W  DEKLLI DY+PNGSL    TA        S +    P+ +  R+KI +G+A+GL Y++E   KK VHG++KP+NILL
Sbjct:  452 QTQLVTVDGETRLDLDTLLKASAYILGTTGTGIVYKAVLENGTAFAVRRIETESCAAAKPKEFEREVRAIAKLRHPNLVRIRGFCWGDDEKLLISDYVPNGSLLCFFTATKASSSSSSSSSLQNPLTFEARLKIARGMARGLSYINE---KKQVHGNIKPNNILL 613          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  233 VAFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL-GT*YG 685
            + FDL++LL+ASA VLGK   G  YKV LED  T+ V+R+ E    + +EF+ ++E IG I+H N+ TLR Y++S DEKL++YDY  +GSL+T LHG+ G+     + W  R+ ++ G A+G+ ++H  S  K VHG++K SNI L G  YG
Sbjct:  299 LVFDLEDLLRASAEVLGKGPFGTTYKVDLEDSATIVVKRIKEVSVPQ-REFEQQIENIGSIKHENVATLRGYFYSKDEKLVVYDYYEHGSLSTLLHGQKGLRDRKRLEWETRLNMVYGTARGVAHIHSQSGGKLVHGNIKSSNIFLNGKGYG 449          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32
Identity = 69/147 (46.94%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  236 AFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILLGT 676
            +FDL++LL+ASA VLGK   G  YK VLED  ++AV+RL +  + + ++F+ ++E IG I+H N+V L+AYY+S DEKL++YDY   GS+A+ LHG  G  +  P+ W  R+KI  G AKG+  +H+ +  K VHG++K SNI L +
Sbjct:  329 SFDLEDLLRASAEVLGKGTFGTTYKAVLEDATSVAVKRLKDVAAGK-RDFEQQMEIIGGIKHENVVELKAYYYSKDEKLMVYDYFSRGSVASLLHGNRG-ENRIPLDWETRMKIAIGAAKGIARIHKENNGKLVHGNIKSSNIFLNS 473          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 81/209 (38.76%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   50 LVGLLFSYCYSRVCGFGEGKDENCYAKGGKGRKECLCFRKDESETLSENVEQYD-LVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWS-VDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            L+ +L   C   +C     K     AKGG+     +  + ++        E    LV  D  +AF  D+LL A+A ++GKS  G VYK  LEDG  +AV+RL E  ++  KEF+ E+  +G+IRH N++ LRAYY     EKL+++DY+  GSLAT LH +   V    + W  R+ +IKG+A+GL YLH  +    +HG+L  SN+LL
Sbjct:  419 LIVMLILVCV--LCCLLRKKANETKAKGGEAGPGAVAAKTEKGGEAEAGGETGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFENEINVLGRIRHPNLLALRAYYLGPKGEKLVVFDYMSRGSLATFLHARGPDVH---INWPTRMSLIKGMARGLFYLHTHA--NIIHGNLTSSNVLL 620          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 73/154 (47.40%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  212 LVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWS-VDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            LV  D    F  D+LL A+A ++GKS  G  YK  LEDG+ +AV+RL E  ++  KEF+ EV A+GKIRH N++ LRAYY     EKLL++DY+  GSL+  LH +      T +PW  R+KI KGI++GL +LH  S +  +H +L  SNILL
Sbjct:  521 LVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGVKEFEGEVTALGKIRHQNLLALRAYYLGPKGEKLLVFDYMSKGSLSAFLHARG---PETLIPWETRMKIAKGISRGLAHLH--SNENMIHENLTASNILL 669          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  239 FDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKI-RHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            FDL++LLKASA VLGK   G  YK VLED   + V+RL E  + + KEF+ ++E +GKI +HSN V L AYY+S DEKLL+Y Y+  GSL   +HG  G      V W  R+KI  G +K + YLH     K+VHGD+K SNILL
Sbjct:  340 FDLEDLLKASAEVLGKGSFGTAYKAVLEDTTAVVVKRLREVVASK-KEFEQQMEIVGKINQHSNFVPLLAYYYSKDEKLLVYKYMTKGSLFGIMHGNRG---DRGVDWETRMKIATGTSKAISYLHSL---KFVHGDIKSSNILL 477          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 66/145 (45.52%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  239 FDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKI-RHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            FDL++LL+ASA VLGK   G  YK VLE+  T+ V+RL E  + + +EF+ ++E I ++  H ++V LRAYY+S DEKL++ DY P G+L++ LHG  G    TP+ W  RVKI    AKG+ +LH     K+ HG++K SN+++
Sbjct:  351 FDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVAAGK-REFEQQMEIISRVGNHPSVVPLRAYYYSKDEKLMVCDYYPAGNLSSLLHGNRGSEK-TPLDWDSRVKITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIM 493          
BLAST of CF417958 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 2
Query:  239 FDLDELLKASAFVLGKSGIGIVYKVVLEDGHTLAVRRLGEGGSQRFKEFQTEVEAIGKIRHSNIVTLRAYYWSVDEKLLIYDYIPNGSLATALHGKPGMVSFTPVPWSVRVKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILL 670
            FDL++LL+ASA VLGK   G  YK VL+    +AV+RL +  +   +EF+ ++E +G + H N+V LRAYY+S DEKLL+YD++P GSL+  LHG  G     P+ W VR  I  G A+GL YLH   P    HG++K SNILL
Sbjct:  358 FDLEDLLRASAEVLGKGTFGTAYKAVLDAVTLVAVKRLKDV-TMADREFKEKIEVVGAMDHENLVPLRAYYYSGDEKLLVYDFMPMGSLSALLHGNKG-AGRPPLNWEVRSGIALGAARGLDYLHSQDPLS-SHGNVKSSNILL 498          
The following BLAST results are available for this feature:
BLAST of CF417958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
Y4372_ARATH2.333e-4248.96Probable LRR receptor-like serine/threonine-protei... [more]
Y2267_ARATH1.516e-3350.34Probable inactive receptor kinase At2g26730 OS=Ara... [more]
RPKL_ARATH7.524e-3348.48Receptor protein kinase-like protein At4g34220 OS=... [more]
Y5332_ARATH1.283e-3246.05Probable inactive receptor kinase At5g53320 OS=Ara... [more]
Y4374_ARATH8.318e-3246.94Probable inactive receptor kinase At4g23740 OS=Ara... [more]
IMK3_ARATH4.564e-3038.76Probable leucine-rich repeat receptor-like protein... [more]
IMK2_ARATH7.786e-3047.40Probably inactive leucine-rich repeat receptor-lik... [more]
Y5516_ARATH1.328e-2951.03Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5830_ARATH2.265e-2945.52Probable inactive receptor kinase At5g58300 OS=Ara... [more]
RLK90_ARATH1.918e-2848.61Probable inactive receptor kinase RLK902 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-888 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417958 ID=CF417958; Name=CF417958; organism=Citrus sinensis; type=EST; length=686bp
TAAGAGTGCTATAGTAGCTATAATTGTGAGTGATGTAATTGGAATTTGCC
TTGTCGGGCTATTGTTCTCATATTGCTATTCAAGGGTTTGTGGTTTTGGC
GAGGGCAAGGATGAAAATTGTTATGCAAAAGGAGGTAAGGGAAGAAAAGA
GTGTTTGTGCTTCAGGAAAGATGAATCAGAGACTCTCTCAGAGAATGTTG
AACAGTATGACCTTGTGCCGCTGGATACACAGGTGGCTTTTGATTTGGAT
GAGCTGCTTAAGGCTTCAGCTTTTGTTCTTGGCAAGAGTGGAATTGGGAT
TGTATACAAAGTTGTGCTTGAAGATGGACATACCTTAGCAGTGAGAAGGT
TGGGTGAAGGCGGCTCTCAGAGGTTTAAGGAGTTCCAAACCGAAGTAGAA
GCAATTGGGAAGATAAGGCATTCAAACATTGTAACTCTCAGAGCATATTA
CTGGTCTGTTGATGAGAAACTGCTCATATATGATTATATACCTAATGGAA
GCCTAGCCACTGCACTCCATGGGAAGCCAGGAATGGTATCATTTACGCCA
GTGCCATGGTCAGTACGGGTGAAAATCATAAAAGGGATTGCAAAAGGCTT
GGTTTATCTGCATGAATTCAGCCCCAAAAAGTATGTCCATGGAGATCTGA
AACCTAGCAATATTTTGCTTGGGACATAATATGGAA
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