CF417959

Overview
NameCF417959
Unique NameCF417959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_RAT (Exosome complex exonuclease RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41
Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G    EV ++ P
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTP 177          

HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  637 PEEREPLPLIIHHLP 681
            PEER+P+PL IHH+P
Sbjct:  177 PEERDPVPLSIHHMP 191          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_MOUSE (Exosome complex exonuclease RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41
Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G    EV ++ P
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTP 177          

HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  637 PEEREPLPLIIHHLP 681
            PEER+P+PL IHH+P
Sbjct:  177 PEERDPVPLSIHHMP 191          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_HUMAN (Exosome complex exonuclease RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41
Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G    EV ++ P
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTP 177          

HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  637 PEEREPLPLIIHHLP 681
            PEER+P+PL IHH+P
Sbjct:  177 PEERDPVPLSIHHMP 191          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_BOVIN (Exosome complex exonuclease RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.329e-40
Identity = 76/162 (46.91%), Postives = 113/162 (69.75%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXD 613
            E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G +
Sbjct:   10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 171          

HSP 2 Score: 28.8758 bits (63), Expect = 3.329e-40
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  640 EEREPLPLIIHHLP 681
            EER+P+PL IHH+P
Sbjct:  178 EERDPVPLSIHHMP 191          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: RRP45_SCHPO (Exosome complex component rrp45 OS=Schizosaccharomyces pombe GN=rrp45 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.780e-39
Identity = 74/173 (42.77%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  119 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHP 637
            ++N K F+  +L  G+R+DGR   ++R L I+FG+E G  +V  G T +M  +T ++ +PY DRP +G  SI TE +P+A  +FE GR S+  + + R++++ +R S A+DTESLC+++G+  W +R  +H +++ GNLVDAA IA +A+L  FRRPE ++ G    EV VHP
Sbjct:    8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHP 177          

HSP 2 Score: 23.0978 bits (48), Expect = 2.780e-39
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  640 EEREPLPLIIHHLP 681
            EER P+PL I H+P
Sbjct:  179 EERVPVPLSILHMP 192          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: RRP45_YEAST (Exosome complex component RRP45 OS=Saccharomyces cerevisiae GN=RRP45 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.176e-33
Identity = 72/181 (39.78%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   98 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHP 637
            +A    ++ +E +FI  AL    R+DGR+  ++R + I FG+E G   V++G T +   ++ Q+ QPY DRP EG   I TE SPMA   FE G    E  V   RI+++ +R S A+D E LC++AG   WA+R D+H LD  G  +DA+ IA +A L+ F++P+ ++ G    ++IVHP
Sbjct:    1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVHP 178          

HSP 2 Score: 23.0978 bits (48), Expect = 1.176e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  643 EREPLPLIIHHLP 681
            EREP+PL I H+P
Sbjct:  181 EREPVPLGILHIP 193          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_PYRKO (Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis GN=TK1633 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 70/150 (46.67%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  152 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 592
            L  G RIDGR+  +YR L IK     + +GS+ V+LG T ++  +  +L +P+ D P+ G ++   E  P+A P+FE G P E+A+EL R+VDRG+RES+AVD E L ++ GKLV  I ID+H+LD+GGNL+DA+ I A+A+LL+ + P+
Sbjct:   19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_METTH (Probable exosome complex exonuclease 2 OS=Methanobacterium thermoautotrophicum GN=MTH_682 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 73/171 (42.69%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  131 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVH 634
            ++ I   +++  RIDGR+  E+R +SI+ G   + +GSS V+LG T I+  V  Q+ +P+ D P  G +   +E  PMA P+FE G P E +VEL R+VDR +RESR +D E LC++ G  VW + +DLHI+D  GNL DAA +A +A+LL  R P   +   +D EV+++
Sbjct:   13 RKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV---EDGEVVIN 180          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_METKA (Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri GN=MK0380 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 68/163 (41.72%), Postives = 108/163 (66.26%), Query Frame = 2
Query:  149 ALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVI 628
            A+ +G RIDGR+  E+R + ++ G   + +GS+ V+LG T ++  V  ++ +PY D PNEG L++  E  P+ADPSFE G P E+A+EL R+VDRG+RES  +D E LC+  G+  W   +D+H+LD+ GNL DA+ I ++++L     P+  +   D++EV+
Sbjct:   17 AIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEV-VDDEVEVM 178          
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_SULTO (Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii GN=ST0442 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:  128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVI 628
            +K  I  AL  GIR+DGR   +YR +S+      + +GS+ V+LG T ++  V  +  +P+ D PN+G L +  E  P+A  +FE G P E+A+EL R+VDR LR+S+AVD   L ++ GK VW   +D+++LD GGN++DA  +AA+A+L   + P+  + G D++++I
Sbjct:   15 KKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEG-DNVKII 183          
The following BLAST results are available for this feature:
BLAST of CF417959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EXOS9_RAT5.223e-4146.20Exosome complex exonuclease RRP45 OS=Rattus norveg... [more]
EXOS9_MOUSE5.223e-4146.20Exosome complex exonuclease RRP45 OS=Mus musculus ... [more]
EXOS9_HUMAN5.223e-4146.20Exosome complex exonuclease RRP45 OS=Homo sapiens ... [more]
EXOS9_BOVIN3.329e-4046.91Exosome complex exonuclease RRP45 OS=Bos taurus GN... [more]
RRP45_SCHPO2.780e-3942.77Exosome complex component rrp45 OS=Schizosaccharom... [more]
RRP45_YEAST1.176e-3339.78Exosome complex component RRP45 OS=Saccharomyces c... [more]
ECX2_PYRKO1.662e-3246.67Probable exosome complex exonuclease 2 OS=Pyrococc... [more]
ECX2_METTH1.407e-3142.69Probable exosome complex exonuclease 2 OS=Methanob... [more]
ECX2_METKA4.092e-3141.72Probable exosome complex exonuclease 2 OS=Methanop... [more]
ECX2_SULTO5.345e-3140.00Probable exosome complex exonuclease 2 OS=Sulfolob... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-889 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417959 ID=CF417959; Name=CF417959; organism=Citrus sinensis; type=EST; length=682bp
GTCACTGTTCACTTTTTCATGCTTTGATTGATTGCCCAGAAGTTTAGACA
GCGGAAAAGTTGCGTGTAAAGAAGCGAGACAACAAATGGATACGAGATTA
GCAAATACGTGGAGGTTGACTGTGAATGAGAAGAGATTTATAGAGACTGC
GCTTAGTTCTGGTATCAGAATCGATGGTCGCAACCCTTTTGAATATCGTA
AACTATCCATCAAGTTTGGCAGGGAAGATGGTTCATCAGAAGTTCAGCTA
GGTCAGACTCATATAATGGGTTTTGTAACCGGCCAACTGGTTCAACCTTA
TCGGGACCGACCTAATGAAGGGACATTGTCAATCTTTACTGAATTCTCTC
CAATGGCTGATCCTTCATTTGAGACAGGTCGCCCTAGTGAATCTGCGGTG
GAGTTGGGACGAATAGTAGATCGTGGTCTAAGAGAAAGCAGGGCGGTGGA
TACGGAATCACTTTGTGTTCTAGCTGGGAAGTTAGTTTGGGCTATACGTA
TTGATCTCCACATTCTAGACAATGGGGGAAATCTTGTTGATGCTGCCAAT
ATTGCTGCTTTGGCTTCTCTCCTGACGTTTAGGAGGCCCGAATGCTCACT
AGGAGGANAAGATGATCTCGAAGTGATAGTGCATCCCCCGAGGAGAGAGA
GCCACTGCCGTTGATAATACATCATCTTCCTA
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