CF417959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_RAT (Exosome complex exonuclease RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41 Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G EV ++ P Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTP 177 HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 637 PEEREPLPLIIHHLP 681 PEER+P+PL IHH+P Sbjct: 177 PEERDPVPLSIHHMP 191
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_MOUSE (Exosome complex exonuclease RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41 Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G EV ++ P Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTP 177 HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 637 PEEREPLPLIIHHLP 681 PEER+P+PL IHH+P Sbjct: 177 PEERDPVPLSIHHMP 191
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_HUMAN (Exosome complex exonuclease RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 5.223e-41 Identity = 79/171 (46.20%), Postives = 117/171 (68.42%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHPP 640 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G EV ++ P Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTP 177 HSP 2 Score: 31.5722 bits (70), Expect = 5.223e-41 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 637 PEEREPLPLIIHHLP 681 PEER+P+PL IHH+P Sbjct: 177 PEERDPVPLSIHHMP 191
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: EXOS9_BOVIN (Exosome complex exonuclease RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.329e-40 Identity = 76/162 (46.91%), Postives = 113/162 (69.75%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXD 613 E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G + Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 171 HSP 2 Score: 28.8758 bits (63), Expect = 3.329e-40 Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 640 EEREPLPLIIHHLP 681 EER+P+PL IHH+P Sbjct: 178 EERDPVPLSIHHMP 191
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: RRP45_SCHPO (Exosome complex component rrp45 OS=Schizosaccharomyces pombe GN=rrp45 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.780e-39 Identity = 74/173 (42.77%), Postives = 116/173 (67.05%), Query Frame = 2 Query: 119 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHP 637 ++N K F+ +L G+R+DGR ++R L I+FG+E G +V G T +M +T ++ +PY DRP +G SI TE +P+A +FE GR S+ + + R++++ +R S A+DTESLC+++G+ W +R +H +++ GNLVDAA IA +A+L FRRPE ++ G EV VHP Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHP 177 HSP 2 Score: 23.0978 bits (48), Expect = 2.780e-39 Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 640 EEREPLPLIIHHLP 681 EER P+PL I H+P Sbjct: 179 EERVPVPLSILHMP 192
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: RRP45_YEAST (Exosome complex component RRP45 OS=Saccharomyces cerevisiae GN=RRP45 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.176e-33 Identity = 72/181 (39.78%), Postives = 109/181 (60.22%), Query Frame = 2 Query: 98 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVHP 637 +A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + ++ Q+ QPY DRP EG I TE SPMA FE G E V RI+++ +R S A+D E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ G ++IVHP Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVHP 178 HSP 2 Score: 23.0978 bits (48), Expect = 1.176e-33 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 643 EREPLPLIIHHLP 681 EREP+PL I H+P Sbjct: 181 EREPVPLGILHIP 193
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_PYRKO (Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis GN=TK1633 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32 Identity = 70/150 (46.67%), Postives = 104/150 (69.33%), Query Frame = 2 Query: 152 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 592 L G RIDGR+ +YR L IK + +GS+ V+LG T ++ + +L +P+ D P+ G ++ E P+A P+FE G P E+A+EL R+VDRG+RES+AVD E L ++ GKLV I ID+H+LD+GGNL+DA+ I A+A+LL+ + P+ Sbjct: 19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_METTH (Probable exosome complex exonuclease 2 OS=Methanobacterium thermoautotrophicum GN=MTH_682 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31 Identity = 73/171 (42.69%), Postives = 109/171 (63.74%), Query Frame = 2 Query: 131 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVIVH 634 ++ I +++ RIDGR+ E+R +SI+ G + +GSS V+LG T I+ V Q+ +P+ D P G + +E PMA P+FE G P E +VEL R+VDR +RESR +D E LC++ G VW + +DLHI+D GNL DAA +A +A+LL R P + +D EV+++ Sbjct: 13 RKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV---EDGEVVIN 180
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_METKA (Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri GN=MK0380 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 68/163 (41.72%), Postives = 108/163 (66.26%), Query Frame = 2 Query: 149 ALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVI 628 A+ +G RIDGR+ E+R + ++ G + +GS+ V+LG T ++ V ++ +PY D PNEG L++ E P+ADPSFE G P E+A+EL R+VDRG+RES +D E LC+ G+ W +D+H+LD+ GNL DA+ I ++++L P+ + D++EV+ Sbjct: 17 AIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEV-VDDEVEVM 178
BLAST of CF417959 vs. ExPASy Swiss-Prot
Match: ECX2_SULTO (Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii GN=ST0442 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31 Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2 Query: 128 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGXDDLEVI 628 +K I AL GIR+DGR +YR +S+ + +GS+ V+LG T ++ V + +P+ D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+AVD L ++ GK VW +D+++LD GGN++DA +AA+A+L + P+ + G D++++I Sbjct: 15 KKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEG-DNVKII 183 The following BLAST results are available for this feature:
BLAST of CF417959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417959 ID=CF417959; Name=CF417959; organism=Citrus sinensis; type=EST; length=682bpback to top |