CF417967

Overview
NameCF417967
Unique NameCF417967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_CRIGR (Protein slowmo homolog 2 OS=Cricetulus griseus GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 56/154 (36.36%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +S L+S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWEMVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPHPQDPEK-TVLTQEAIITVKGVS-LSSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_HUMAN (Protein slowmo homolog 2 OS=Homo sapiens GN=SLMO2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 56/154 (36.36%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +S L+S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEK-TVLTQEAIITVKGVS-LSSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_BOVIN (Protein slowmo homolog 2 OS=Bos taurus GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 56/154 (36.36%), Postives = 91/154 (59.09%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ IIG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   T+  QE  I +K +S L S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEK-TILTQEAIITVKGVS-LGSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO_DICDI (Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.933e-19
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 2
Query:   44 TQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXA 484
            T +H YKH W   ++AS+RK+  PE       IL +D L+ ++DP +G L  T+ +      P +++ I+G   C   E T VD ++K M L T+N++    + V+E   YE HPDN   WT+  QE ++     S++  +A K+ A
Sbjct:    6 TIKHTYKHLWSDASTASFRKYPSPERP----DILSIDILSKEIDPTTGVLKCTKLIICKGNTPSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WTLFTQEATV----TSSIFGVARKMEA 143          

HSP 2 Score: 25.0238 bits (53), Expect = 6.933e-19
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  471 RRWXLRCAEKFMQNSVKGREVME 539
            R+    C ++F+ N+ KGR++ME
Sbjct:  139 RKMEAFCLDRFVANAGKGRKIME 161          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_MACFA (Protein slowmo homolog 2 OS=Macaca fascicularis GN=SLMO2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 55/154 (35.71%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PHP +P   T+  QE  I +K +S L+S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPDK-TILTQEAIITVKGVS-LSSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_RAT (Protein slowmo homolog 2 OS=Rattus norvegicus GN=Slmo2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 55/154 (35.71%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD   ++M+L + N+S    + V+E++ Y+PHP +P   TV  QE  I +K +S L+S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPIRRTMELKSTNISFTNMVSVDERLTYKPHPQDPEK-TVLTQEALITVKGVS-LSSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_MOUSE (Protein slowmo homolog 2 OS=Mus musculus GN=Slmo2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 54/154 (35.06%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L+     P  V+ +IG  +   +  E +VVD  +++M+L + N+S    + V+E++ Y+PH  +P   TV  QE  I +K +S L+S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHVDP-SGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPHLQDPEK-TVLTQEALITVKGVS-LSSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO1_HUMAN (Protein slowmo homolog 1 OS=Homo sapiens GN=SLMO1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 54/153 (35.29%), Postives = 86/153 (56.21%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXA 484
            +K ++ EH++ HPW+ V  A+ RK+ +P N      +L VD L  ++D   G+L++ R L+     P  VR I+G  + + +  E +VVD   K M+L + N++L   + V E++ Y PHP+NP   TV  QE  I +K +S L S  E + A
Sbjct:    1 MKIWSSEHVFGHPWDTVIQAAMRKYPNPMNPS----VLGVDVLQRRVDG-RGRLHSLRLLSTEWGLPSLVRAILGTSRTLTYIREHSVVDPVEKKMELCSTNITLTNLVSVNERLVYTPHPENPE-MTVLTQEAIITVKGIS-LGSYLESLMA 146          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO2_PIG (Protein slowmo homolog 2 OS=Sus scrofa GN=SLMO2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 55/154 (35.71%), Postives = 91/154 (59.09%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +D  SGKL++ R L+     P  V+ IIG  +   +  E +VVD  +K+M+L + N+S    + V+E++ Y+PHP + +  TV  QE  I +K +S L S  E + A+
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-ASGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQD-SEKTVLTQEAIITVKGVS-LGSYLEGLMAS 147          
BLAST of CF417967 vs. ExPASy Swiss-Prot
Match: SLMO1_MOUSE (Protein slowmo homolog 1 OS=Mus musculus GN=Slmo1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 53/154 (34.42%), Postives = 87/154 (56.49%), Query Frame = 2
Query:   32 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQD--ICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVXAT 487
            +K ++ EH++ HPW+ V  A+ RK+ +P N      ++ VD L   +D   G+L++ R L+     P  VR I+G +  + +  E +VVD  ++ M+L + N++L   + V E++ Y PHP+NP   TV  QE  I +K +S L S  E + AT
Sbjct:    1 MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPC----VVGVDVLERSVDGC-GRLHSLRLLSTEWGLPGLVRAILGANRTLTYIKERSVVDPAARKMELCSTNITLTNLVSVNERLVYTPHPENPEK-TVLTQEAIITVKGIS-LGSYLESLMAT 147          
The following BLAST results are available for this feature:
BLAST of CF417967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SLMO2_CRIGR4.693e-1936.36Protein slowmo homolog 2 OS=Cricetulus griseus GN=... [more]
SLMO2_HUMAN6.130e-1936.36Protein slowmo homolog 2 OS=Homo sapiens GN=SLMO2 ... [more]
SLMO2_BOVIN6.130e-1936.36Protein slowmo homolog 2 OS=Bos taurus GN=SLMO2 PE... [more]
SLMO_DICDI6.933e-1934.01Protein slowmo homolog OS=Dictyostelium discoideum... [more]
SLMO2_MACFA8.005e-1935.71Protein slowmo homolog 2 OS=Macaca fascicularis GN... [more]
SLMO2_RAT1.783e-1835.71Protein slowmo homolog 2 OS=Rattus norvegicus GN=S... [more]
SLMO2_MOUSE1.156e-1735.06Protein slowmo homolog 2 OS=Mus musculus GN=Slmo2 ... [more]
SLMO1_HUMAN1.510e-1735.29Protein slowmo homolog 1 OS=Homo sapiens GN=SLMO1 ... [more]
SLMO2_PIG2.575e-1735.71Protein slowmo homolog 2 OS=Sus scrofa GN=SLMO2 PE... [more]
SLMO1_MOUSE2.575e-1734.42Protein slowmo homolog 1 OS=Mus musculus GN=Slmo1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-897 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417967 ID=CF417967; Name=CF417967; organism=Citrus sinensis; type=EST; length=682bp
TGCAATTCTGTTTGTCTTAAAGATCGTGATGGTGAAAGCATACACACAAG
AGCACATTTACAAGCACCCGTGGGAGCGTGTTACTTCTGCATCTTGGCGC
AAGTTTGCTGACCCTGAGAACAAGCGCACGTTATCCCATATACTTGAAGT
GGACACTTTGAACCACAAGCTCGATCCTCTATCTGGCAAGCTATACACAA
CGCGTGCACTCACTGTCCATGCCCCTGGACCTTGGTTTGTTCGCAAAATT
ATTGGTCAAGATATATGTCACTGTGTTGAATCAACGGTTGTTGATGCCCA
GTCAAAGTCAATGCAGCTCACTACTCGCAATGTTAGTCTAAAAAAGTATA
TAGAAGTGGAGGAGAAGATCCGATACGAACCCCATCCTGATAATCCAACT
GGTTGGACAGTTTGTAGACAAGAGACAAGTATAAGGATTAAGCCATTATC
GGCACTGGCATCAATGGCAGAGAAGGTGGNAGCTACGATGTGCAGAAAAG
TTCATGCAGAATAGTGTCAAGGGTAGAGAAGTAATGGAGAGGATCTGTAA
GTACCTTGAAGCTGAATCTCGTGGAATTTCTCTCTAGTTTCTAGTTTTTG
AGTTCAATTTCTGAGTTTTATAGTACTTGGAGCAANGGGCTTTTAAGTCC
TTCTAGAGTAGGAAAAACTAATAATGTATAAG
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