CF417971

Overview
NameCF417971
Unique NameCF417971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.515e-68
Identity = 140/190 (73.68%), Postives = 159/190 (83.68%), Query Frame = 1
Query:    4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 573
            +LQLEEK+LVAEIKKTAKTGNEAAT+ILARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P KQAK+IK+FQKQSAQ+DMTIEMMSE+I                 NQVLDEIGV +ASQLSSAPKGRIA++ A    + A  TN +SES++V++LEKR ASLRRI
Sbjct:   34 SLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTA-ATNKNSESSEVDELEKRLASLRRI 222          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.409e-55
Identity = 115/188 (61.17%), Postives = 142/188 (75.53%), Query Frame = 1
Query:    4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 567
            +LQ EEKKLV EIK+TAK+GNE AT+ILARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM++ M PAKQAK+++EFQKQSAQMDMT EMMS+SI                 NQVLDEIG+DIASQLSSAPKG+I  + A +             S+ +++LEKR A+LR
Sbjct:   34 SLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDV-----------GSSGIDELEKRLAALR 210          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 69/189 (36.51%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 573
            LQ +EKKL+ EIKKTAK G   A +++A+ L+R R QI      ++Q++GV+   Q L ++ ++   M+G TKAM  MN+QM      K+++EF++Q+ +M+M  E+M ++I                 +QVLDEIG+DI  +L +AP G +A   A N V  A  T          DL+ R  +LR++
Sbjct:   37 LQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 72/189 (38.10%), Postives = 109/189 (57.67%), Query Frame = 1
Query:    7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570
            L+ +EKK++A+IKK AK G   A +I+A+ LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  K++ EF+KQS  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P     S     +VA A K   S+  AD + DLE+R  +LRR
Sbjct:   36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP-----STGGSLSVAGAKKGEPSAALADADADLEERLNNLRR 219          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 71/189 (37.57%), Postives = 109/189 (57.67%), Query Frame = 1
Query:    7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570
            L+ +EKK++A+IKK AK G   A +I+A+ LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  K++ EF+KQS  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P     S     +VA A K   ++  AD + DLE+R  +LRR
Sbjct:   36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP-----STGGSLSVAGAKKGEATAALADADADLEERLNNLRR 219          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 64/187 (34.22%), Postives = 110/187 (58.82%), Query Frame = 1
Query:    4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 564
            AL+ +EK+L  EIKK AKTGN  A ++LA+QLV++R+Q T      +++  ++T T+ + +   ++  M   TK M A+N++M P K  + ++ FQK++A+MDMT EMM++++                 NQVLDEIG++I+ +++ AP    A+R  P+A          ++    ED+E++  +L
Sbjct:   34 ALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPS---AARKTPSA------ATAKADGISDEDIERQLKAL 211          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 450
            ALQ +EKK++ +IKK AK G   + +I+A+ LVR R  I      + Q++ V+   Q L ++ +++  M+G TKAM+ MN+QM   +  K++ EF++QS +MDM  EMM++++                 NQVLDEIG+D+ASQL  AP
Sbjct:   34 ALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAP 182          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 1
Query:    7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPK-GRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570
            L+ +EKK++A+IKK AK G   A RI+A+ LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  K++ EF++Q+  MDM  EMM+++I                 +QVLDE+G+ +  +LS+ P  G   S  A    A A    T+S  AD + DLE+R  +LRR
Sbjct:   36 LETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEA----TASALADADADLEERLKNLRR 221          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 68/189 (35.98%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570
            L+ +EKK++A+IKK AK G   A +I+A+ LVR R+ +      RA I+ V+   Q L ++ S++  M+G TKAM  MN+Q+K  +  K++ EF++QS  MDM  EMM+++I                 +QVLDE+G+ ++ +LS+ P     +     +VA   K       AD + DLE+R  +LRR
Sbjct:   36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLP-----ATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219          
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 61/188 (32.45%), Postives = 108/188 (57.45%), Query Frame = 1
Query:    1 AALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 564
            AAL+ +EK+L  EIKK AK GN+ A R+LA+QLV LR+Q T      +++  ++T T+ + +   ++  M    K M A+N++M P K  + ++ FQK++ +M+MT EM+++++                 NQVLDEIG++I+ +++           AP+A  + P  +TS  +   E++E++  +L
Sbjct:   33 AALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA----------KAPSAARSLPSASTSKSTISDEEIERQLKAL 210          
The following BLAST results are available for this feature:
BLAST of CF417971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VPS2B_ARATH5.515e-6873.68Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2C_ARATH1.409e-5561.17Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2A_ARATH2.265e-2936.51Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2A_XENTR2.344e-2638.10Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_XENLA3.999e-2637.57Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2B_DANRE1.519e-2534.22Charged multivesicular body protein 2b OS=Danio re... [more]
CM2A2_DICDI1.286e-2439.60Charged multivesicular body protein 2a homolog 2 O... [more]
CHM2A_MOUSE1.286e-2437.89Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_DANRE1.286e-2435.98Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2B_BOVIN2.866e-2432.45Charged multivesicular body protein 2b OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-901 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417971 ID=CF417971; Name=CF417971; organism=Citrus sinensis; type=EST; length=686bp
GCAGCTCTTCAGTTGGAGGAGAAGAAATTGGTTGCAGAGATCAAGAAAAC
TGCCAAAACTGGCAATGAGGCTGCCACTAGAATATTAGCCCGTCAACTTG
TTCGGCTACGCCAACAAATAACTAATTTACAGGGGAGTCGTGCTCAAATC
AGAGGCGTAGCAACTCATACACAGGCTCTATATGCTAGTACTTCAATTTC
TACTGGAATGAGAGGCGCAACCAAGGCAATGGTGGCAATGAACCAGCAAA
TGAAACCTGCAAAACAAGCTAAATTGATTAAAGAATTCCAGAAGCAGTCG
GCACAAATGGATATGACGATTGAGATGATGTCAGAGTCTATTGATGAAAC
TTTAGACAAAGACGAGGCTGAAGAGGAAACAGAGGAACTTACTAACCAGG
TGCTTGATGAGATTGGTGTGGATATTGCATCTCAGTTATCTTCAGCTCCA
AAAGGTCGGATTGCATCAAGGAATGCTCCTAACGCTGTTGCAAATGCTCC
TAAGACCAATACTAGTTCTGAATCTGCTGATGTTGAGGATCTTGAAAAGA
GATTTGCCTCCCTTCGACGCATCTGATCTGAAATGCATGGCAGTCAGTTC
TCTTCGAAGTCTGTGCTTTCTAGTGTACATTTTATGTGTGTAGTATAAGT
GGATTTGATGCGTGCGAGCTTGGAATTGTATTGCTG
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