CF417971
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 5.515e-68 Identity = 140/190 (73.68%), Postives = 159/190 (83.68%), Query Frame = 1 Query: 4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 573 +LQLEEK+LVAEIKKTAKTGNEAAT+ILARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P KQAK+IK+FQKQSAQ+DMTIEMMSE+I NQVLDEIGV +ASQLSSAPKGRIA++ A + A TN +SES++V++LEKR ASLRRI Sbjct: 34 SLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTA-ATNKNSESSEVDELEKRLASLRRI 222
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.409e-55 Identity = 115/188 (61.17%), Postives = 142/188 (75.53%), Query Frame = 1 Query: 4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 567 +LQ EEKKLV EIK+TAK+GNE AT+ILARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM++ M PAKQAK+++EFQKQSAQMDMT EMMS+SI NQVLDEIG+DIASQLSSAPKG+I + A + S+ +++LEKR A+LR Sbjct: 34 SLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDV-----------GSSGIDELEKRLAALR 210
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29 Identity = 69/189 (36.51%), Postives = 107/189 (56.61%), Query Frame = 1 Query: 7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 573 LQ +EKKL+ EIKKTAK G A +++A+ L+R R QI ++Q++GV+ Q L ++ ++ M+G TKAM MN+QM K+++EF++Q+ +M+M E+M ++I +QVLDEIG+DI +L +AP G +A A N V A T DL+ R +LR++ Sbjct: 37 LQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26 Identity = 72/189 (38.10%), Postives = 109/189 (57.67%), Query Frame = 1 Query: 7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570 L+ +EKK++A+IKK AK G A +I+A+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K + K++ EF+KQS MDM EMM+++I +QVLDE+G+ + +LS+ P S +VA A K S+ AD + DLE+R +LRR Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP-----STGGSLSVAGAKKGEPSAALADADADLEERLNNLRR 219
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26 Identity = 71/189 (37.57%), Postives = 109/189 (57.67%), Query Frame = 1 Query: 7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570 L+ +EKK++A+IKK AK G A +I+A+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K + K++ EF+KQS MDM EMM+++I +QVLDE+G+ + +LS+ P S +VA A K ++ AD + DLE+R +LRR Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP-----STGGSLSVAGAKKGEATAALADADADLEERLNNLRR 219
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25 Identity = 64/187 (34.22%), Postives = 110/187 (58.82%), Query Frame = 1 Query: 4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 564 AL+ +EK+L EIKK AKTGN A ++LA+QLV++R+Q T +++ ++T T+ + + ++ M TK M A+N++M P K + ++ FQK++A+MDMT EMM++++ NQVLDEIG++I+ +++ AP A+R P+A ++ ED+E++ +L Sbjct: 34 ALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPS---AARKTPSA------ATAKADGISDEDIERQLKAL 211
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24 Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 4 ALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 450 ALQ +EKK++ +IKK AK G + +I+A+ LVR R I + Q++ V+ Q L ++ +++ M+G TKAM+ MN+QM + K++ EF++QS +MDM EMM++++ NQVLDEIG+D+ASQL AP Sbjct: 34 ALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAP 182
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24 Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 1 Query: 7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPK-GRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570 L+ +EKK++A+IKK AK G A RI+A+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K + K++ EF++Q+ MDM EMM+++I +QVLDE+G+ + +LS+ P G S A A A T+S AD + DLE+R +LRR Sbjct: 36 LETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEA----TASALADADADLEERLKNLRR 221
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24 Identity = 68/189 (35.98%), Postives = 107/189 (56.61%), Query Frame = 1 Query: 7 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 570 L+ +EKK++A+IKK AK G A +I+A+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K + K++ EF++QS MDM EMM+++I +QVLDE+G+ ++ +LS+ P + +VA K AD + DLE+R +LRR Sbjct: 36 LEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLP-----ATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219
BLAST of CF417971 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24 Identity = 61/188 (32.45%), Postives = 108/188 (57.45%), Query Frame = 1 Query: 1 AALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 564 AAL+ +EK+L EIKK AK GN+ A R+LA+QLV LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K + ++ FQK++ +M+MT EM+++++ NQVLDEIG++I+ +++ AP+A + P +TS + E++E++ +L Sbjct: 33 AALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA----------KAPSAARSLPSASTSKSTISDEEIERQLKAL 210 The following BLAST results are available for this feature:
BLAST of CF417971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417971 ID=CF417971; Name=CF417971; organism=Citrus sinensis; type=EST; length=686bpback to top |