CF503831

Overview
NameCF503831
Unique NameCF503831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503831 vs. ExPASy Swiss-Prot
Match: PLDB1_ARATH (Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.699e-24
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 GIKKLKSG-DDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 186
            GIKK K   DDALLRI+RIP I+G+SD P+V END E+WHVQIFRSIDS SV+GFPKDPK+AT
Sbjct:  581 GIKKFKLPIDDALLRIDRIPDILGVSDTPTVSENDPEAWHVQIFRSIDSNSVKGFPKDPKDAT 643          

HSP 2 Score: 33.8834 bits (76), Expect = 2.699e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  191 KNLVCGKNVLIDMSI 235
            KNLVCGKNVLIDMSI
Sbjct:  645 KNLVCGKNVLIDMSI 659          
BLAST of CF503831 vs. ExPASy Swiss-Prot
Match: PLDG1_ARATH (Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.892e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1
Query:    1 GIKKLKSG-DDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 186
            GI KLKS  DD+LLRI+RIP I+G+S+A S  +ND ESWHVQ+FRSIDS+SV+GFPKDPKEAT
Sbjct:  467 GIGKLKSSSDDSLLRIDRIPDIVGLSEASSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEAT 529          

HSP 2 Score: 31.5722 bits (70), Expect = 2.892e-23
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  176 RKLRSKNLVCGKNVLIDMSI 235
            ++   +NL+CGKN+LIDMSI
Sbjct:  526 KEATGRNLLCGKNILIDMSI 545          
BLAST of CF503831 vs. ExPASy Swiss-Prot
Match: PLDG3_ARATH (Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.018e-22
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 1
Query:    1 GIKKLK-SGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 186
            GI +L+ S DD+LLR++RIP I+G+S+A S  +ND ESWHVQ+FRSIDS+SV+GFPKDPKEAT
Sbjct:  474 GIGRLRTSSDDSLLRLDRIPDIMGLSEASSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEAT 536          

HSP 2 Score: 31.5722 bits (70), Expect = 4.018e-22
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  176 RKLRSKNLVCGKNVLIDMSI 235
            ++   +NL+CGKN+LIDMSI
Sbjct:  533 KEATGRNLLCGKNILIDMSI 552          
BLAST of CF503831 vs. ExPASy Swiss-Prot
Match: PLDG2_ARATH (Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 3.296e-21
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   19 SGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 186
            S DD+LLRI RIP I+G+S+A S  +ND ESWHVQ+FRSIDSTSV+GFPKDP+EAT
Sbjct:  471 SFDDSLLRINRIPDIMGLSEASSANDNDPESWHVQVFRSIDSTSVKGFPKDPEEAT 526          

HSP 2 Score: 31.187 bits (69), Expect = 3.296e-21
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  191 KNLVCGKNVLIDMSI 235
            +NL+CGKN+LIDMSI
Sbjct:  528 RNLLCGKNILIDMSI 542          
BLAST of CF503831 vs. ExPASy Swiss-Prot
Match: PLDB2_ARATH (Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.263e-14
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    4 IKKLKSG-DDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATQQ 192
            I KLK+  DDALLRI+RIP I+ + DAP+            IFRSIDS SV+GFPKDPK AT +
Sbjct:  543 INKLKTSYDDALLRIDRIPDILRVLDAPT------------IFRSIDSNSVKGFPKDPKYATSK 594          

HSP 2 Score: 35.4242 bits (80), Expect = 2.263e-14
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2
Query:  188 SKNLVCGKNVLIDMSI 235
            SKNLVCGKNVLIDMSI
Sbjct:  593 SKNLVCGKNVLIDMSI 608          
The following BLAST results are available for this feature:
BLAST of CF503831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PLDB1_ARATH2.699e-2474.60Phospholipase D beta 1 OS=Arabidopsis thaliana GN=... [more]
PLDG1_ARATH2.892e-2373.02Phospholipase D gamma 1 OS=Arabidopsis thaliana GN... [more]
PLDG3_ARATH4.018e-2268.25Phospholipase D gamma 3 OS=Arabidopsis thaliana GN... [more]
PLDG2_ARATH3.296e-2173.21Phospholipase D gamma 2 OS=Arabidopsis thaliana GN... [more]
PLDB2_ARATH2.263e-1456.25Phospholipase D beta 2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-318 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503831 ID=CF503831; Name=CF503831; organism=Citrus sinensis; type=EST; length=235bp
GGGATTAAGAAACTGAAGTCCGGGGATGATGCTTTGCTTAGGATAGAAAG
AATTCCAGGCATTATAGGCATCTCTGATGCTCCTTCTGTTAGAGAGAATG
ATGCTGAATCTTGGCATGTTCAGATTTTTCGTTCAATTGATTCAACTTCT
GTTAGAGGCTTCCCAAAGGATCCTAAGGAAGCTACGCAGCAAGAATCTGG
TGTGTGGTAAGAATGTGCTCATTGACATGAGCATA
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