CF503834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.285e-29 Identity = 66/146 (45.21%), Postives = 100/146 (68.49%), Query Frame = 3 Query: 3 CEAISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEIRDR----GLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428 CE+IS TL++SL+ LA + S K F+T +R+ +E +R + L+IFFEE+R + + V+L SELH+ FQK++FL++DCTR+GAKL++LM S ++ FR L R+I+T+LD FP+ +VD+ GEV EL+ LV + K Sbjct: 21 CESISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLVIFFEELRIQIRVGSIPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLDTFPVRSVDLPGEVNELIYLVMRQTRK 166
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 8.618e-26 Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 3 Query: 6 EAISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEIRDRGLNL-----SDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428 E+IS TLL+SLI LA + + SK F+T +++ RE +R+I LL+ FEEIR R N E+H+ FQK++FL+EDCTR+GA+L ++M S ++ RVL R+I+T+L FP+ +VD+ EV EL++LV + K Sbjct: 22 ESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQNLLVVFEEIRIRIRNSRRYFHDSAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVSDHLRVLTRSISTSLSAFPVASVDLTTEVNELIDLVVRQARK 167
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.367e-13 Identity = 41/139 (29.50%), Postives = 76/139 (54.68%), Query Frame = 3 Query: 12 ISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEI---RDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANK 419 +S T L + LA+ S+ RRN+ IR++ IL F+E+ R + + S LCF E+ + Q+++ L++DC+R +KLW+L++ +A F L+ ++T LD+ PL D+ + ++L+ L+ + Sbjct: 27 LSSDTKLTRSLFLASHEISSMQPLPFILRRNSLSLIRKVKILASVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRV-SKLWLLLQIDIVAFNFHELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQ 164
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.591e-11 Identity = 43/156 (27.56%), Postives = 82/156 (52.56%), Query Frame = 3 Query: 12 ISPATLLNSLITLANGVCSN-NSKFFATQRRNAREAIRQIGILLIFFEEI----------------RDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428 +S L+ +L ++++ V S S F+ QR+NAR IR+I I ++ FE + R + +LC EL+L + + L++ C + +KLW+L+++ I+ F L + I+T LDV P++ + + +++E +EL+ + K Sbjct: 27 LSGVALVQTLASISSEVVSCFTSVRFSFQRKNARSLIRKIEIFVVLFEFLVDSNWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLYRSKILVDYCA-QSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSRK 181 The following BLAST results are available for this feature:
BLAST of CF503834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503834 ID=CF503834; Name=CF503834; organism=Citrus sinensis; type=EST; length=429bpback to top |