CF503834

Overview
NameCF503834
Unique NameCF503834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.285e-29
Identity = 66/146 (45.21%), Postives = 100/146 (68.49%), Query Frame = 3
Query:    3 CEAISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEIRDR----GLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428
            CE+IS  TL++SL+ LA  + S   K F+T +R+ +E +R +  L+IFFEE+R +     +     V+L  SELH+ FQK++FL++DCTR+GAKL++LM S  ++  FR L R+I+T+LD FP+ +VD+ GEV EL+ LV  +  K
Sbjct:   21 CESISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLVIFFEELRIQIRVGSIPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLDTFPVRSVDLPGEVNELIYLVMRQTRK 166          
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.618e-26
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 3
Query:    6 EAISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEIRDRGLNL-----SDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428
            E+IS  TLL+SLI LA  + +  SK F+T +++ RE +R+I  LL+ FEEIR R  N               E+H+ FQK++FL+EDCTR+GA+L ++M S  ++   RVL R+I+T+L  FP+ +VD+  EV EL++LV  +  K
Sbjct:   22 ESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQNLLVVFEEIRIRIRNSRRYFHDSAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVSDHLRVLTRSISTSLSAFPVASVDLTTEVNELIDLVVRQARK 167          
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.367e-13
Identity = 41/139 (29.50%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   12 ISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEI---RDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANK 419
            +S  T L   + LA+   S+        RRN+   IR++ IL   F+E+   R + +  S    LCF E+ +  Q+++ L++DC+R  +KLW+L++   +A  F  L+  ++T LD+ PL   D+  + ++L+ L+  +
Sbjct:   27 LSSDTKLTRSLFLASHEISSMQPLPFILRRNSLSLIRKVKILASVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRV-SKLWLLLQIDIVAFNFHELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQ 164          
BLAST of CF503834 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.591e-11
Identity = 43/156 (27.56%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   12 ISPATLLNSLITLANGVCSN-NSKFFATQRRNAREAIRQIGILLIFFEEI----------------RDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVELVANKQGK 428
            +S   L+ +L ++++ V S   S  F+ QR+NAR  IR+I I ++ FE +                R +        +LC  EL+L   + + L++ C  + +KLW+L+++  I+  F  L + I+T LDV P++ + +  +++E +EL+  +  K
Sbjct:   27 LSGVALVQTLASISSEVVSCFTSVRFSFQRKNARSLIRKIEIFVVLFEFLVDSNWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLYRSKILVDYCA-QSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSRK 181          
The following BLAST results are available for this feature:
BLAST of CF503834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PUB19_ARATH1.285e-2945.21U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB18_ARATH8.618e-2643.15U-box domain-containing protein 18 OS=Arabidopsis ... [more]
PUB16_ARATH8.367e-1329.50U-box domain-containing protein 16 OS=Arabidopsis ... [more]
PUB17_ARATH4.591e-1127.56U-box domain-containing protein 17 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-321 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503834 ID=CF503834; Name=CF503834; organism=Citrus sinensis; type=EST; length=429bp
CATGTGAGGCCATTTCTCCGGCGACGCTGTTGAATTCTTTGATCACTCTT
GCCAACGGCGTATGCAGTAACAATTCAAAATTCTTTGCGACTCAAAGAAG
AAATGCCCGTGAAGCAATTCGTCAAATAGGAATTCTTTTAATATTCTTCG
AGGAGATTCGCGACCGTGGATTGAATCTTTCGGACTTGGTGGTTCTTTGC
TTTTCGGAGCTTCACTTGACCTTCCAGAAAGTCCAATTCTTGATGGAAGA
TTGCACCCGAGAAGGAGCCAAGCTCTGGGTTCTAATGAAGTCTCAGTTTA
TTGCAACTCAGTTTCGTGTTCTTATCCGAGCAATCGCTACGGCTCTCGAC
GTTTTTCCATTGGATACAGTGGACATTTGTGGTGAAGTGAAGGAATTGGT
TGAGTTGGTGGCGAACAAGCAAGGAAAGC
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