CF503846

Overview
NameCF503846
Unique NameCF503846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503846_ssr1 microsatellite CF503846_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:170..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.491e-16
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE ENG+LWEV+GKWVVQGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.954e-16
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPY+E ENGILWEV+GKWVVQGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAI 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.954e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE  NGILWEVEGKWVVQGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.954e-16
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE ENG++WEVEGKWVVQGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE +NG+LWEV+GKWVVQGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE  NG+LWEVEGKWV+QGA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.263e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDS+PYKE ENG+LWEVEGKWVV+GA+
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.955e-15
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLL+GDELLSDSFPYKE +NG+LWEV+GKWVVQGA+
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.955e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSFPYKE ENGILWEVEGKWV  GA+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.583e-15
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            M+VYQDLL+GDELLSDSFPYKE  NG+LWEVEGKWVVQGA+
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAV 41          
The following BLAST results are available for this feature:
BLAST of CF503846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_SOLLC3.491e-1690.24Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ5.954e-1690.24Translationally-controlled tumor protein homolog O... [more]
TCTP_HEVBR5.954e-1692.68Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA5.954e-1690.24Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.732e-1587.80Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.732e-1587.80Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA2.263e-1587.80Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN2.955e-1585.37Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH2.955e-1590.24Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ6.583e-1585.37Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-333 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503846 ID=CF503846; Name=CF503846; organism=Citrus sinensis; type=EST; length=269bp
GAGAGAGAGAGAACTAGTCTCCAGTTTTCTCCGTTGATTATTTTTCTTTT
TTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCAAGATCTCCTC
ACCGGTGATGAGCTTCTCTCCGACTCTTTTCCCTACAAGGAAACTGAGAA
TGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCCTTT
GATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGA
GGGTGTTGATGACCAAGCC
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