CF503891

Overview
NameCF503891
Unique NameCF503891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_ARATH (Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.043e-65
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 440
            + +EGCMHG+LDNVYKT+Q+ E I+N K+DLLLCCGDFQAVRNE DM+SLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAA NIYFLGFAGVVKFGN+RIGGLSGIYN
Sbjct:    3 IAIEGCMHGDLDNVYKTIQHYEQIHNTKVDLLLCCGDFQAVRNEKDMDSLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAATNIYFLGFAGVVKFGNVRIGGLSGIYN 128          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_ORYSJ (Lariat debranching enzyme OS=Oryza sativa subsp. japonica GN=DBR1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.858e-59
Identity = 104/125 (83.20%), Postives = 111/125 (88.80%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + VEGCMHGELD VY TL+ +E     KIDLLLCCGDFQAVRNEND++ LNV  ++REMKSFWKYYSGQ VAP PTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY
Sbjct:    3 IAVEGCMHGELDKVYDTLRELEKAEGVKIDLLLCCGDFQAVRNENDLQCLNVKPRFREMKSFWKYYSGQAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_XENTR (Lariat debranching enzyme OS=Xenopus tropicalis GN=dbr1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.402e-50
Identity = 85/125 (68.00%), Postives = 109/125 (87.20%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + VEGC HGELD +Y+T+Q++E   N K+DLLLCCGDFQAVRNE DM+ + VP+KYR+M++F+KYYSG+++API TIFIGGNHEASNYL EL YGGW APNIY++G+AGVVK+  +RIGG+SGI+
Sbjct:    3 IAVEGCCHGELDKIYETIQFLEKKENTKVDLLLCCGDFQAVRNEGDMKCMAVPQKYRQMQTFYKYYSGEKLAPILTIFIGGNHEASNYLQELPYGGWVAPNIYYVGYAGVVKYRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1A_XENLA (Lariat debranching enzyme A OS=Xenopus laevis GN=dbr1-A PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.572e-49
Identity = 85/125 (68.00%), Postives = 107/125 (85.60%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + VEGC HGELD +Y+T+Q++E   N K+DLLLCCGDFQAVRNE DM+ + VP KYR+M++F+KYYSG++ API TIFIGGNHEASNYL EL YGGW APNIY++G+AGVVK+  +RIGG+SGI+
Sbjct:    3 IAVEGCCHGELDKIYETIQFLEKKENTKVDLLLCCGDFQAVRNEGDMKCMAVPMKYRQMQTFYKYYSGEKKAPILTIFIGGNHEASNYLQELPYGGWVAPNIYYMGYAGVVKYRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1B_XENLA (Lariat debranching enzyme B OS=Xenopus laevis GN=dbr1-B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.801e-49
Identity = 84/125 (67.20%), Postives = 107/125 (85.60%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + VEGC HGELD +Y+T+Q++E   N K++LLLCCGDFQAVRNE DM+ + VP KYR+M++F+KYYSG++ API TIFIGGNHEASNYL EL YGGW APNIY++G+AGVVK+  +RIGG+SGI+
Sbjct:    3 IAVEGCCHGELDKIYETIQFLEKKENTKVELLLCCGDFQAVRNEGDMKCMAVPVKYRQMQTFYKYYSGEKKAPILTIFIGGNHEASNYLQELPYGGWVAPNIYYMGYAGVVKYRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_DANRE (Lariat debranching enzyme OS=Danio rerio GN=dbr1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.872e-48
Identity = 82/123 (66.67%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   69 VEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            VEGC HGELD +Y+++ Y+EN +  K+DLLLCCGDFQAVRNE DM+ + VP KYR M++F+KYYSG++ AP+ TIFIGGNHEASN+L EL YGGW APNIY+LG+AGV+++  +RIGGLSGI+
Sbjct:    5 VEGCCHGELDKIYESISYLENKDGVKVDLLLCCGDFQAVRNEGDMKCMAVPAKYRHMQTFYKYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGYAGVIRYKGVRIGGLSGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_DROME (Lariat debranching enzyme OS=Drosophila melanogaster GN=ldbr PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.597e-44
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + VEGC HGEL+ +Y T++ +E +   KIDLLLCCGDFQ+ RN  D++++ VP+KY +M SF+KYYSG+ VAP+ TIFIGGNHEASNYL EL YGGW APNIY+LG+AGVV    +RI G+SGI+
Sbjct:    3 IAVEGCAHGELERIYDTIEGIEKVGGTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYYSGELVAPVLTIFIGGNHEASNYLQELPYGGWVAPNIYYLGYAGVVNVNGVRIAGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_CHICK (Lariat debranching enzyme OS=Gallus gallus GN=DBR1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.392e-44
Identity = 77/123 (62.60%), Postives = 101/123 (82.11%), Query Frame = 3
Query:   69 VEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            V GC HG LD +Y+TL+ ++  +N + DLLLCCGDFQAVRNE D+  + VP KYR M++F++YYSG++ AP+ T+FIGGNHEASN+L EL YGGW APNIY+LG+AGVV+F  +RIGG+SGI+
Sbjct:    5 VAGCCHGALDKMYETLELLQRRHNVRPDLLLCCGDFQAVRNEADLRCMAVPAKYRHMQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGYAGVVRFRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_MOUSE (Lariat debranching enzyme OS=Mus musculus GN=Dbr1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 7.556e-44
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 3
Query:   69 VEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            V GC HGELD +Y+TL   E   +  +DLLLCCGDFQAVRNE D+  + VP KYR M++F++YYSG++ AP+ TIFIGGNHEASN+L EL YGGW APNIY+LG AGVVK+  +RIGG+SGI+
Sbjct:    5 VAGCCHGELDKIYETLALAERRGSGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_DROPS (Lariat debranching enzyme OS=Drosophila pseudoobscura pseudoobscura GN=DBR1 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.289e-43
Identity = 77/125 (61.60%), Postives = 100/125 (80.00%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + +EGC HGEL+ +Y T+  +E  +N KIDLLLCCGDFQ+ RN  D++++ VP+KY ++ +F+KYYSG+ VAP+ TIFIGGNHEASNYL EL YGGW APNIY+LG+AGVV    +RI G+SGIY
Sbjct:    3 IAIEGCAHGELERIYDTIACIEKESNTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDICTFYKYYSGECVAPVLTIFIGGNHEASNYLQELPYGGWVAPNIYYLGYAGVVNVNGVRIAGISGIY 127          
The following BLAST results are available for this feature:
BLAST of CF503891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DBR1_ARATH2.043e-6588.10Lariat debranching enzyme OS=Arabidopsis thaliana ... [more]
DBR1_ORYSJ2.858e-5983.20Lariat debranching enzyme OS=Oryza sativa subsp. j... [more]
DBR1_XENTR5.402e-5068.00Lariat debranching enzyme OS=Xenopus tropicalis GN... [more]
DBR1A_XENLA1.572e-4968.00Lariat debranching enzyme A OS=Xenopus laevis GN=d... [more]
DBR1B_XENLA7.801e-4967.20Lariat debranching enzyme B OS=Xenopus laevis GN=d... [more]
DBR1_DANRE3.872e-4866.67Lariat debranching enzyme OS=Danio rerio GN=dbr1 P... [more]
DBR1_DROME2.597e-4462.40Lariat debranching enzyme OS=Drosophila melanogast... [more]
DBR1_CHICK3.392e-4462.60Lariat debranching enzyme OS=Gallus gallus GN=DBR1... [more]
DBR1_MOUSE7.556e-4464.23Lariat debranching enzyme OS=Mus musculus GN=Dbr1 ... [more]
DBR1_DROPS1.289e-4361.60Lariat debranching enzyme OS=Drosophila pseudoobsc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-378 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503891 ID=CF503891; Name=CF503891; organism=Citrus sinensis; type=EST; length=441bp
CAGGAAGAGGTTTTGCTTAAACCCTCAAATCAGCCCAAATAGATAAAGAA
AAAAGATGAGGATTGCCGGTGGAAGGATGCATGCATGGAGAACTAGACAA
CGTGTACAAAACGCTCCAATACATGGAGAATATCAACAATTACAAAATCG
ATCTCCTTCTCTGCTGCGGCGACTTTCAGGCTGTGAGAAATGAGAATGAC
ATGGAGAGCTTAAATGTGCCACGAAAATACCGCGAAATGAAGTCGTTTTG
GAAGTACTATTCCGGCCAAGAAGTTGCTCCGATTCCGACTATCTTCATCG
GCGGGAATCACGAAGCTTCTAATTATTTGTGGGAATTGTATTATGGGGGT
TGGGCAGCACCGAACATATACTTTCTAGGTTTTGCTGGAGTGGTGAAGTT
TGGCAATATTCGTATCGGCGGACTTTCTGGGATTTATAATG
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