CF503904

Overview
NameCF503904
Unique NameCF503904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF503904 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.375e-17
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:  114 YESKRLWKLAGPAIFTSISQYSLGALTQTFAGRVGELELAAFSVENSVIAGLAFGVMLGMGSALETLCGQAFGAGSIKMLGVYMQRSWVILL 389
            +ESK LW L+G +I  S+  Y L  +T  F G +G L+LA  S+    I GLA+G+MLGM SA++T+CGQA+GA     +G+  QR+ V+ L
Sbjct:   50 WESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHL 141
The following BLAST results are available for this feature:
BLAST of CF503904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH2.375e-1745.65Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-391 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503904 ID=CF503904; Name=CF503904; organism=Citrus sinensis; type=EST; length=400bp
GTCAGCGGAAAATACAAGTCCACTTCTGAGTAACAAGGCGACCGAAAGCT
ACGATATTTATAGCCGATGGAGATGATCAGCAAAAGCAGTTAGGTTTTGT
TAAGGAATTTGGTTATGAATCTAAGCGGCTATGGAAACTCGCAGGGCCGG
CAATTTTCACCTCTATTAGTCAGTATTCGCTTGGTGCTCTTACTCAAACC
TTTGCTGGTCGCGTCGGTGAACTCGAGCTCGCTGCTTTCTCCGTTGAGAA
CTCTGTCATTGCTGGTCTTGCATTCGGTGTCATGTTGGGAATGGGAAGTG
CTTTGGAGACTTTATGTGGGCAAGCATTCGGTGCGGGGAGTATTAAGATG
TTGGGCGTGTACATGCAGAGATCATGGGTCATTCTGCTGATCACTTCTTG
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