CF503909

Overview
NameCF503909
Unique NameCF503909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1110..1649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 7.855e-57
Identity = 109/175 (62.29%), Postives = 136/175 (77.71%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 525
            KGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEKTGRF I+SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  320 KGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.340e-56
Identity = 106/182 (58.24%), Postives = 139/182 (76.37%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 537
            KGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K GRF+I+SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  321 KGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.062e-53
Identity = 109/184 (59.24%), Postives = 138/184 (75.00%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 537
            KGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEKT RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  320 KGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.811e-53
Identity = 109/181 (60.22%), Postives = 137/181 (75.69%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 537
            KGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EKT RF I+SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  319 KGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 366
            +SQ+I QYY F+R GF+GYK I E     A  L E +EKTG FEI++    +P+V + LK++S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E +
Sbjct:  322 ASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 375
            +SQ+I QYY F+R GF+GYK I E     A  L + +EKTG FEI++    +P+V + LK+ S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E ++ +
Sbjct:  322 ASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEAL 446          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 381
            + +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P N EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  318 RSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.448e-18
Identity = 44/129 (34.11%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 381
            + +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P + EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  318 RSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES---LPSRVSTKTAH 414
            + +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N  + R V R D  +++V    + + E ++E+ +   L   V+T   H
Sbjct:  316 RSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELNNAHILYHDVNTSKTH 458          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.226e-18
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 378
            + +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + L  +E
Sbjct:  321 RSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448          
The following BLAST results are available for this feature:
BLAST of CF503909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DCE_PETHY7.855e-5762.29Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC1.340e-5658.24Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH1.062e-5359.24Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH1.811e-5360.22Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM4.502e-2038.52Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA1.711e-1936.80Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_LISIN3.811e-1934.88Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO1.448e-1834.11Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO2.470e-1833.57Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEC_LISIN3.226e-1835.94Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-396 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503909 ID=CF503909; Name=CF503909; organism=Citrus sinensis; type=EST; length=540bp
AAAGGCTCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGGCTTGG
CTTTGAGGGTTACAAGAACATTATGGAAAATTGCATGGGGAATGCTAGAG
CGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTTGAAATTCTCTCCAAG
GATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAAGGACAGCAGCGCACA
CACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTC
CGGCCTATACAATGCCTGCTAATGCTGAAAATGTGGCGGTTCTTCGGGTG
GTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGAAAGACTCATCTCACA
CATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTCCAAGTCGTGTATCCA
CAAAAACTGCCCATGTCATACCCATGGTCAACGAAACTCAGGGTGATAAG
CCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGAAGTCACCAGGCACTG
GAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCATGCTGA
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