CF503921

Overview
NameCF503921
Unique NameCF503921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:913..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 3.568e-74
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            QLKQRC+E FK+G+LGIEQLA VDGLC++V K IGASDPV TYHVNLS+FTSIPD+W I QLFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHEM   GC   G YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPH FAVTRA+ G S  D
Sbjct:  439 QLKQRCVEGFKEGSLGIEQLAGVDGLCEWVIKAIGASDPVLTYHVNLSVFTSIPDFWGIDQLFPIVPIHKLDQRPAARGILSDLTCDSDGKINKFIGGESSLPLHEMDNNGC-SGGRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAVMGQSSAD 606          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.313e-73
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            Q K+RC+E+FK GTLGIEQLA VDGLCD + + IG  DPV+ YHVNLS+FTS+PD+W I QLFPIVPIH LDE+P  RG+LSDLTCDSDGKIDKFIGG +SLPLHEM G G    G YYLGMFLGG+YEEALGG+HNLFGGPSVVRVLQSDGPH FAVTRA+ G SC D
Sbjct:  467 QFKKRCVEEFKQGTLGIEQLAAVDGLCDLITETIGVKDPVKKYHVNLSVFTSVPDFWGINQLFPIVPIHRLDEKPTARGILSDLTCDSDGKIDKFIGGESSLPLHEMEGHG----GGYYLGMFLGGSYEEALGGLHNLFGGPSVVRVLQSDGPHGFAVTRAVAGSSCAD 631          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.148e-72
Identity = 131/169 (77.51%), Postives = 146/169 (86.39%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            QLKQRC+E FK+G L IEQLA+VDGLC++V K IGASDPV TY++NLS+FTSIPD W I QLFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KFIGG +SLPLHE+   G G  G Y+LGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVTRA+PG S  D
Sbjct:  452 QLKQRCVEGFKEGVLSIEQLASVDGLCEWVLKAIGASDPVHTYNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKFIGGESSLPLHELDKNGSG--GRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGQSSAD 618          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 4.362e-72
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            ++K+RC+EQFK GT+ +EQLA V+GLC+ V K +GA++ VR YHVNLSIFTS+PD W I Q+FPI+PIH LDE+P VRG+LSDLTCDSDGKIDKFI G +SLPLHEM GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVTRA+PGPSCGD
Sbjct:  455 EMKERCVEQFKQGTVCMEQLAAVEGLCELVRKAVGAAESVRRYHVNLSIFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEMEGG-----RTYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGD 618          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.126e-70
Identity = 128/169 (75.74%), Postives = 142/169 (84.02%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            QLKQRC+E+FK+G+L IEQLA VDGLC++V KEIG SDPV TY+VNLS+F SIPD+W I QLFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHE+   G      YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ DGPH FAVTRAM G S  D
Sbjct:  445 QLKQRCVEEFKEGSLSIEQLAGVDGLCEWVTKEIGGSDPVLTYNVNLSVFHSIPDFWGIDQLFPIVPIHRLDQRPVARGILSDLTCDSDGKINKFIGGESSLPLHELDNNG------YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQKDGPHGFAVTRAMMGQSSAD 607          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_SOLLC (Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 9.095e-70
Identity = 122/157 (77.71%), Postives = 139/157 (88.54%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFA 473
            QLKQRC+EQFKDG+L IEQLA VD +CD+V+K IG +DPVRTYHVNLS+FTSIPD+W   QLFPIVPIH LDE+P +RG+LSDLTCDSDGK+DKFIGG +SLPLHE+   G G+ G YYLGMFLGGAYEEALGG+HNLFGGPSVVRV+QSD PHSFA
Sbjct:  349 QLKQRCVEQFKDGSLDIEQLAAVDSICDWVSKAIGVADPVRTYHVNLSVFTSIPDFWGFSQLFPIVPIHRLDEKPTMRGILSDLTCDSDGKVDKFIGGESSLPLHEI---GSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFA 502          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 3.456e-69
Identity = 125/168 (74.40%), Postives = 142/168 (84.52%), Query Frame = 3
Query:    6 LKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            LKQRC+E FKDG LG+EQLA VDGLC+ V+K +G +D V TY+VNLS+FTSIPD+W IGQLFPI+PIH LD++P  RG+LSDLTCDSDGKIDKFIG  +SLPLHE+ GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGP S+AVTRA+PGPS  D
Sbjct:  465 LKQRCVELFKDGCLGMEQLAAVDGLCELVSKALGVADGVCTYNVNLSVFTSIPDFWGIGQLFPIMPIHRLDQQPKARGILSDLTCDSDGKIDKFIGDESSLPLHELSGG-----EGYYLGMFLGGAYEEALGGVHNLFGGPSVVRVQQSDGPQSYAVTRAVPGPSSSD 627          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 8.513e-68
Identity = 123/169 (72.78%), Postives = 140/169 (82.84%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            QLK+RC +QFKDG LG+E LA VD LC+ VA+ +GA++P RTYH+NLS+FTS+PD WAIGQ+FPI+PI  L ERP V GVLSDLTCDSDGK+D FIGG  SLPLHE+     G RG YYLGMFLGGAY+EALGG+HNLFGGPSVVRV QSDGPH FAVTRA  GPSC D
Sbjct:  455 QLKRRCADQFKDGVLGLEHLAAVDSLCEIVARGMGAAEPPRTYHINLSVFTSLPDMWAIGQMFPIIPIQRLGERPAVDGVLSDLTCDSDGKVDHFIGGRHSLPLHELPVH--GTRG-YYLGMFLGGAYQEALGGLHNLFGGPSVVRVSQSDGPHCFAVTRAAAGPSCAD 620          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPE2_THECC (Arginine decarboxylase (Fragment) OS=Theobroma cacao GN=SPE2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.976e-40
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKF 287
            Q KQRC+EQFK+GTLGIEQLA+VDGLC++V K IGASDPV TY++NLS+FTSIPD W I QLFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KF
Sbjct:  312 QWKQRCVEQFKEGTLGIEQLASVDGLCEWVLKAIGASDPVHTYNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKF 406          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_ANASP (Biosynthetic arginine decarboxylase OS=Anabaena sp. (strain PCC 7120) GN=speA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.569e-29
Identity = 74/188 (39.36%), Postives = 103/188 (54.79%), Query Frame = 3
Query:    3 QLKQRCIEQFKDGTLGIEQLATVDGLC--------------DFVAKEIGASDPVRT--YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            Q K+  I +F  G L + + A  + L               D+V  E+   + +    Y++NLS+F S PD WAI QLFPI+PIH LDE P  RG+L+DLTCDSDGKID+FI      + L LH    G      PYY+GMFL GAY+E +G +HNLFG  + V +  +  P  + +   + G +  +
Sbjct:  446 QFKEEAISRFNLGILRLRERAKAERLYWACCQKILDIIRQHDYVPDELEDLEKIMASIYYINLSVFQSAPDCWAIDQLFPIMPIHRLDEEPTQRGILADLTCDSDGKIDRFIDLRDVKSVLELHPFQPG-----EPYYMGMFLNGAYQEIMGNLHNLFGDTNAVHIQLT--PKGYQIEHVVKGDTMSE 626          
The following BLAST results are available for this feature:
BLAST of CF503921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPE1_ARATH3.568e-7479.29Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE1_PEA2.313e-7375.74Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE2_ARATH1.148e-7277.51Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_SOYBN4.362e-7275.15Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_BRAJU3.126e-7075.74Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_SOLLC9.095e-7077.71Arginine decarboxylase OS=Solanum lycopersicum PE=... [more]
SPE1_DIACA3.456e-6974.40Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_ORYSJ8.513e-6872.78Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
SPE2_THECC1.976e-4078.95Arginine decarboxylase (Fragment) OS=Theobroma cac... [more]
SPEA_ANASP1.569e-2939.36Biosynthetic arginine decarboxylase OS=Anabaena sp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-409 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503921 ID=CF503921; Name=CF503921; organism=Citrus sinensis; type=EST; length=509bp
ATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACTTTAGGT
ATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGCTAAGGA
AATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTATCTATTT
TCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCTATTGTT
CCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTTATCGGA
TTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTGGTGGTA
CGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGAT
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