CF503934

Overview
NameCF503934
Unique NameCF503934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503934 vs. ExPASy Swiss-Prot
Match: PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 67/185 (36.22%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  149 SPHDQSAVKDQQRPIEVFQPKASHDIGQSSGTNEDLHTQALKAFTTTSTNKWMAFEGESGSYPKIKVSDESNGRFFNEKKAVDVDRIFTGANIAERTAEWGL-VVKSDVLGEG-TFKAVNLRKPSGDGDRSKNSLERFTIDSTRTSEESERGAFPRVSEELKAALATLQQTFVVSDATKPDCPIM 697
            SP + +    ++R +E+F P +  +   + G+        L      S++KWM F+                                  A I ERTAEWGL  VK D   +G +FK       S + +RSKN   R + +ST     SE GAFPRVS+ELK AL+TLQQTFVVSDAT+P CPI+
Sbjct:    9 SPLNDAESLSERRSLEIFNPSSGKE---THGSTSSSSKPPLDGNNKGSSSKWMEFQDS--------------------------------AKITERTAEWGLSAVKPDSGDDGISFKL------SSEVERSKNMSRRSSEEST----SSESGAFPRVSQELKTALSTLQQTFVVSDATQPHCPIV 148          
BLAST of CF503934 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 69/221 (31.22%), Postives = 97/221 (43.89%), Query Frame = 2
Query:  140 PNSSPHDQSAVKDQQRPIEVF----------------QPKASHDIGQSSGTNEDLHTQALKAFTT--------TSTNKWMAFEGESGSYPKIKVSDESNGRFFNEKKAVDVDRIFTGANIAE-RTAEWGLVVKSDVLGEGTFKAVNLRKPSG---DGDRSKNSLERFTIDSTRTSEESE-------RGAFPRVSEELKAALATLQQTFVVSDATKPDCPIM 697
            P++ P  ++  +D +  +EVF                +P A  ++    GT+     Q   A +           T  WMA +  S                   KK +  ++    A  AE R AEWGLV+K+D    G  + V +R   G   D +  K + +R + +S R+S E         R   PRVSE+LK AL+T QQTFVVSDATKPD PIM
Sbjct:    7 PSTKPSSRTLPRDTRGSLEVFNPSTQLTRPDNPVFRPEPPAWQNLSDPRGTSPQPRPQQEPAPSNPVRSDQEIAVTTSWMALKDPSPETIS--------------KKTITAEKPQKSAVAAEQRAAEWGLVLKTDTK-TGKPQGVGVRNSGGTENDPNGKKTTSQRNSQNSCRSSGEMSDGDVPGGRSGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIM 212          
The following BLAST results are available for this feature:
BLAST of CF503934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PHOT2_ARATH1.207e-1736.22Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=... [more]
PHOT1_ARATH1.057e-1331.22Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-422 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503934 ID=CF503934; Name=CF503934; organism=Citrus sinensis; type=EST; length=698bp
AACTGAAAGAAGAAACTTTGGCACATAATCCCTTCATACTGCCCAAGAGA
AACACAAGGTCGGTGAGCCTGATGGATTGATCTCATTTTTACACCTGAAC
TTTAACAGATTTTGAGAAGATAGTTCAAATATGAAGCTGCCCAATTCATC
GCCACACGATCAGTCAGCAGTTAAAGACCAGCAAAGACCAATTGAGGTTT
TTCAACCAAAAGCAAGTCACGATATTGGACAATCCAGTGGGACAAATGAA
GATCTTCATACACAAGCATTAAAAGCTTTCACCACTACTAGTACCAACAA
GTGGATGGCATTTGAAGGAGAGAGTGGTAGCTATCCTAAAATCAAAGTCT
CTGATGAATCTAATGGGAGGTTTTTCAATGAAAAGAAAGCTGTGGATGTG
GATCGGATTTTTACTGGAGCCAACATAGCTGAAAGGACAGCAGAGTGGGG
ACTAGTTGTAAAGTCAGATGTTTTAGGAGAAGGCACTTTCAAAGCTGTTA
ATCTGAGGAAGCCGTCTGGAGATGGCGACAGAAGCAAAAACTCATTAGAG
AGATTCACAATAGATTCCACTAGAACATCAGAAGAATCTGAAAGAGGGGC
ATTCCCAAGGGTTTCAGAGGAGTTGAAGGCTGCATTGGCAACATTGCAGC
AAACATTTGTTGTGTCTGATGCCACTAAACCTGACTGCCCTATAATGA
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