CF503991

Overview
NameCF503991
Unique NameCF503991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8787 contig Csv1_Contig8787:332..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM2_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 6.601e-60
Identity = 108/132 (81.82%), Postives = 121/132 (91.67%), Query Frame = 1
Query:    1 LGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQLPDQPGSVILAKEPTLQANFARAVASLSKAQA 396
            L  VKSMKDRYPAYDRISAVLTT+SEEL DVPLFLSLHNLC+TLKC SPSA MFRSAVINA YR+SGTHVNPLG+KTDAPM+VIWDIMRCWVKNHP+KAQ P+QPGSVIL+KEP+ + +F+R + SLSKAQA
Sbjct:  378 LNSVKSMKDRYPAYDRISAVLTTVSEELLDVPLFLSLHNLCATLKCISPSAAMFRSAVINANYRISGTHVNPLGMKTDAPMEVIWDIMRCWVKNHPIKAQSPEQPGSVILSKEPSHEVDFSRHIGSLSKAQA 509          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 4.730e-58
Identity = 107/132 (81.06%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 LGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQLPDQPGSVILAKEPTLQANFARAVASLSKAQA 396
            L  VKSMKDRYPAYDRI AVLTTISEELPDVPLFLSLH+L +TLKCTSPSA +FRSAVINA YRVSG+HVNPLG+KTDAPM++IWDIMRCWVKNHP+K Q P+ PGSVIL+KEP+ QA+F+R V SLSKAQA
Sbjct:  378 LNGVKSMKDRYPAYDRICAVLTTISEELPDVPLFLSLHSLSATLKCTSPSAALFRSAVINAKYRVSGSHVNPLGIKTDAPMEIIWDIMRCWVKNHPIKPQSPEHPGSVILSKEPSHQADFSRHVGSLSKAQA 509          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_HUMAN (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.836e-24
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 LGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQLPDQ--PGSVILAKEPTLQANF 360
            L  V +   R+   +RI  VL+ I+EELPDVPL+ +L  L ST+ C +PS +  RSA+++A +RVS +H     +KTDAP   +WDIMRCW K  PVK +   +  P   IL+ EP LQANF
Sbjct:  412 LEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANF 533          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_MOUSE (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Mus musculus GN=Trmt1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.300e-23
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 LGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQ--LPDQPGSVILAKEPTLQANF 360
            L  V +   R+    RI  VL+ ++EELPDVPL+ +L  L ST+ C +P  +  RSA+++AG+RVS +H     +KTDAP + +WDIMRCW K  PVK +      P   ILA EP L+ANF
Sbjct:  411 LDAVTTNPGRFHTSMRIQGVLSVVTEELPDVPLYYTLDQLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAPPEALWDIMRCWEKECPVKRERLSESSPAFRILAVEPRLKANF 532          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_SCHPO (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Schizosaccharomyces pombe GN=trm1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.183e-22
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   31 YPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQ--LPDQPGSVILAKEPTLQANF 360
            Y    RI  +L    EELPDVP +  L  +CS L+  SP   +F SA++NAGYRVSG+H     +KT+AP   +WD++R W+K+HPVK +       G+ IL K PT + +F
Sbjct:  393 YGTKRRILGMLALADEELPDVPFYFVLSQICSVLRSQSPPQNIFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSWIKDHPVKLENISKTSAGAAILEKTPTAEVDF 504          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_DROME (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Drosophila melanogaster GN=CG6388 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.537e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   46 RISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKAQ--LPDQPGSVILAKEPTLQANF 360
            RI  VL+ + EEL DVPL+ +   LC  LK      + FRSA+++AGYRVS +H +   LKT+AP  V+WDI+R W K HPV  +  +P  P + IL+KE T    F
Sbjct:  379 RIVGVLSMVQEELQDVPLYYTPDKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDILRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEF 485          
BLAST of CF503991 vs. ExPASy Swiss-Prot
Match: TRM1_CAEEL (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Caenorhabditis elegans GN=trm-1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   25 DRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPV---KAQLPDQPGSVILAKEPTLQANFARAVASLSKAQ 393
            +R   + R+  VLT ++EEL DV L+   + + + +K + P +   RSA++NAG++VSG+H NP  +KT+APM ++WDI R   K+  V   K    +  G  IL +  T   NF     ++ +A+
Sbjct:  363 ERLGTHGRLQGVLTMVNEELDDV-LYYEHNQMANVVKVSVPKSQSVRSAILNAGFKVSGSHCNPRAIKTNAPMHLLWDIYRQVAKDTSVDREKRLAKESAGYHILGQPITNTVNFTLHPGAIEQAK 487          
The following BLAST results are available for this feature:
BLAST of CF503991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRM2_ARATH6.601e-6081.82Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_ARATH4.730e-5881.06Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_HUMAN5.836e-2446.72N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_MOUSE1.300e-2345.90N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_SCHPO4.183e-2243.75N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_DROME2.537e-1945.79Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_CAEEL1.103e-1434.92N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-479 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503991 ID=CF503991; Name=CF503991; organism=Citrus sinensis; type=EST; length=397bp
CTAGGTGAAGTGAAGTCTATGAAGGACCGGTATCCTGCCTATGATCGCAT
CTCTGCTGTATTGACAACAATTTCGGAGGAATTGCCTGACGTTCCTCTCT
TTTTGAGTCTGCACAACCTCTGTTCAACATTAAAATGCACTTCCCCTTCG
GCAGTAATGTTCCGATCTGCTGTGATCAATGCAGGATATCGTGTTTCTGG
AACCCACGTGAATCCATTAGGGCTCAAGACCGATGCACCCATGGATGTCA
TATGGGACATAATGCGTTGCTGGGTCAAAAATCATCCAGTCAAAGCTCAA
CTGCCTGATCAGCCAGGAAGTGTAATACTAGCAAAGGAACCAACTCTTCA
AGCCAATTTTGCACGAGCTGTTGCGTCTCTCAGCAAGGCACAAGCCA
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