CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:412..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.699e-61
Identity = 109/116 (93.97%), Postives = 114/116 (98.28%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            SIDNRQIVSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY
Sbjct:  114 SIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 229          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.332e-60
Identity = 108/116 (93.10%), Postives = 114/116 (98.28%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            SIDNRQIVSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY
Sbjct:  114 SIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 229          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.671e-58
Identity = 101/116 (87.07%), Postives = 112/116 (96.55%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S+DNRQIVSASRD++I+LWNTLGECKYTIQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LY
Sbjct:  115 SVDNRQIVSASRDKSIRLWNTLGECKYTIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLY 230          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 1.671e-58
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S+DNRQIVSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LY
Sbjct:  114 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 230          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.723e-58
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S DNRQIVSASRD++I+LWNTLGECKY IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LY
Sbjct:  115 SADNRQIVSASRDKSIRLWNTLGECKYIIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLY 230          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.376e-57
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S+DNRQIVSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LY
Sbjct:  114 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 230          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.490e-54
Identity = 100/120 (83.33%), Postives = 103/120 (85.83%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQE----GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S+DNRQIVSASRDRTIKLWNTLGECKYTI      G+ H  WVSCVRFSPNT QPTIVS SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLY
Sbjct:  126 SVDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLY 245          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.979e-51
Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S+DNRQIVS SRD+TIKLWNTLGECKYTI E + HTEWVSCVRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLY
Sbjct:  115 SVDNRQIVSGSRDKTIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLY 230          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.674e-48
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S DNRQIVS SRD+TIKLWNTLG CKYTIQ+ D+HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY
Sbjct:  114 SADNRQIVSGSRDKTIKLWNTLGVCKYTIQD-DSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 228          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.781e-48
Identity = 88/116 (75.86%), Postives = 95/116 (81.90%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S DNRQIVS SRD+TIKLWNTLG CKYTIQ+ D HT+W SCVRFSPNT  P IVS+ WDR VKVWNL+NCKL+    GHTGYVNTV VSPDGSLCASGGKD   +LWDL EGK LY
Sbjct:  114 SADNRQIVSGSRDKTIKLWNTLGVCKYTIQD-DCHTDWTSCVRFSPNTQNPIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLY 228          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
GBLP_SOYBN4.699e-6193.97Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_MEDSA2.332e-6093.10Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC1.671e-5887.07Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH1.671e-5889.74Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL3.723e-5887.07Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA5.376e-5788.89Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ9.490e-5483.33Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE1.979e-5178.45Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DANRE2.674e-4875.86Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BIOGL7.781e-4875.86Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
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