CF504053

Overview
NameCF504053
Unique NameCF504053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig515 contig Csv1_Contig515:1..382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_HUMAN (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Homo sapiens GN=PIGL PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.972e-15
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  141 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 377
            G +   LLVIAHPDDE+MFF+PT+  L   RH +++LC S GN    G  RK EL ++C VL IPL  V ++D  DF D
Sbjct:   38 GAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPD 116          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_SCHPO (Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Schizosaccharomyces pombe GN=SPAPB2B4.01c PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.129e-14
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  150 KNVLLVIAHPDDESMFFSPTINYLTSRRHN-LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 380
            +++L V AHPDDESMFF PTI+YL ++    +H+LC+SNGNADG+G++R+ EL  A +  +I    V V+     QDG
Sbjct:   32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDG 109          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_BOVIN (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Bos taurus GN=PIGL PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  141 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 377
            G     LLV AHPDDE+MFF+PTI  L   RH L +LC S GN    G IRK EL ++C VL IP   V +++  DF D
Sbjct:   39 GGGSRTLLVTAHPDDEAMFFAPTILGLARLRHQLFLLCFSAGNYYNQGEIRKKELLQSCDVLGIPPSNVMIIENRDFPD 117          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_RAT (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Rattus norvegicus GN=Pigl PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  141 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 377
            G     L+VIAHPDDE+MFF+PTI  L   +  + +LC S+GN    G IRK EL ++CAVL IP  +V ++D  +F D
Sbjct:   38 GAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPD 116          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_MOUSE (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Mus musculus GN=Pigl PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.605e-14
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  141 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 377
            G     L+VIAHPDDE+MFF+PT+  L      + +LC S+GN    G IRK EL ++CAVL IP  +V ++D  DF D
Sbjct:   38 GAGSRALVVIAHPDDEAMFFAPTMLGLARLEQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKRDFPD 116          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: PIGL_DICDI (Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Dictyostelium discoideum GN=pigl PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  102 LHGSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 380
            L+ ++ N+  +    KK VL VIAHPDDE MFF+PTI +       + + C+SNGNA G+G IR+ EL  +C  + I  E V      +FQDG
Sbjct:    5 LNNNEDNSTLI----KKKVLFVIAHPDDECMFFTPTIQHYNFIGSEIFVACLSNGNAVGLGKIREKELIDSCIDMGINQENVFFDQTNNFQDG 93          
BLAST of CF504053 vs. ExPASy Swiss-Prot
Match: GPI12_YEAST (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Saccharomyces cerevisiae GN=GPI12 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   78 LLYSKFSTLHGSQSNAAFLTTGDKK----NVLLVIAHPDDESMFFSPTINYLTS---RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 380
            +LY  F+    S++NA+       K     + LVIAHPDDE MFFSP I+ L S   R    +I+C+S GNA+G+G  R  EL+ + A+L +  E+   + ++DFQDG
Sbjct:   27 ILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-LHNERAVSVQVMDFQDG 133          
The following BLAST results are available for this feature:
BLAST of CF504053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PIGL_HUMAN2.972e-1550.63N-acetylglucosaminyl-phosphatidylinositol de-N-ace... [more]
PIGL_SCHPO1.129e-1448.72Probable N-acetylglucosaminyl-phosphatidylinositol... [more]
PIGL_BOVIN2.516e-1450.63N-acetylglucosaminyl-phosphatidylinositol de-N-ace... [more]
PIGL_RAT4.291e-1448.10N-acetylglucosaminyl-phosphatidylinositol de-N-ace... [more]
PIGL_MOUSE5.605e-1448.10N-acetylglucosaminyl-phosphatidylinositol de-N-ace... [more]
PIGL_DICDI2.130e-1343.01Probable N-acetylglucosaminyl-phosphatidylinositol... [more]
GPI12_YEAST8.948e-1240.74N-acetylglucosaminyl-phosphatidylinositol de-N-ace... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-541 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504053 ID=CF504053; Name=CF504053; organism=Citrus sinensis; type=EST; length=382bp
AAGAAGTATAATTGGTTCAGGCGCGCTCTAGATGTCTTGGCTGCTAGTAA
TTGTATCAACAATAGTAGTCTGGGTGGCTTCTCTATTCAAAATTCTCAAC
TCTTCACGGTTCTCAGTCCAATGCCGCATTTCTTACTACCGGTGACAAGA
AAAATGTGTTGCTGGTTATTGCTCACCCAGATGATGAATCTATGTTTTTC
TCTCCAACAATTAATTACCTGACTTCGAGGCGACATAATCTTCACATATT
ATGCATGTCAAATGGTAATGCAGATGGAATGGGAAACATCAGAAAAGATG
AGCTCCATCGGGCTTGTGCAGTTCTCAAGATTCCATTGGAACAAGTGAAG
GTCCTGGATCTTGTAGATTTCCAGGATGGCTT
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