CF504060

Overview
NameCF504060
Unique NameCF504060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  271 DHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML 546
            +H A L  LW + +P V L   +SEQWK MG+QG +P TDFR  G   L+NL++ A+NY   F++++  Q  +R   EYP A AGI ++F L
Sbjct:  383 EHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFEL 473          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 33/103 (32.04%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 561
            +D +  +H+A+L  LW    P+V  +  +S++W  +G+QG +P+TDFRG G + L+NL++ +  +    + +L K   ++    YPFA+ GIN++ +++ ++D
Sbjct:  118 YDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREIL-KNSNSKCC--YPFAITGINITALVLNLID 217          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 558
            +D     H+  L  LW +  P   LN  IS+QW ++G+QG +P TDFRG G + L NL++ ++NY +   ++L +   N     Y +A+ GIN++ M   +L
Sbjct:  120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 558
            +D +   H+  L  LW +  P   L   IS+QW D+G+QG +P TDFRG G + L NL++ ++NY +   ++L +   N     Y +A+ GIN++ M   +L
Sbjct:  120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD2_BOVIN (ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 558
            +D     H+  L  LW +  P   L   IS+QW D+G+QG +P TDFRG G + L NL++ ++NY +   ++L +   N     Y +A+ GIN++ M   +L
Sbjct:  120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD1_BOVIN (ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFK------QGGNRATWE---------YPFAVAGINVSFMLIKML 558
            +D   P H+  L  LW+   PN  L   IS+QW ++G+QG +P TDFRG G + L NL + A+   A+ Q++L           ++A WE         Y FA+ GIN++ +   +L
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLL 243          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFK------QGGNRATWE---------YPFAVAGINVSFMLIKML 558
            +D   P H+  L  LW+   PN  L   IS+QW ++G+QG +P TDFRG G + L NL + A+    + Q++L           ++A WE         Y FA+ GIN++ +   +L
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLL 243          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD1_HUMAN (ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFK--------------QGGNRATWE---------YPFAVAGINVSFMLIKML 558
            +D   P H+  L  LW+   PN  L   IS+QW ++G+QG +P TDFRG G + L NL + A+    + Q++L                   ++A WE         Y FA+ GIN++ +   +L
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLL 251          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMD1_MOUSE (ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 37/117 (31.62%), Postives = 58/117 (49.57%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFK------QGGNRATWE---------YPFAVAGINVSFMLIKML 558
            +D   P H+  L  LW +  PN  L   +S+QW ++G+QG +P TDFRG G + L NL + A+      Q++L           ++  WE         Y FA+ GIN++ +   +L
Sbjct:  127 YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLL 243          
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMOD_DICDI (Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML---IKMLDLFSENHDV 585
            +++  P HQ  L  LW   FPN V      E W+ +G+Q  +PS+DFRG G   L++L++LA+N+   F   L  +        YP+A +GI V+  L   +K +++ + + DV
Sbjct:  301 YNKDEPSHQRLLETLWSTLFPNQVFQRS-HENWQIIGFQNKDPSSDFRGMGLAGLKHLIYLAQNHKDMFMNPLINR--QPEANYYPYATSGIQVTSFLVECVKPINISANHSDV 411          
The following BLAST results are available for this feature:
BLAST of CF504060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ELMOA_DICDI2.993e-1644.57ELMO domain-containing protein A OS=Dictyostelium ... [more]
ELMOB_DICDI2.802e-1432.04ELMO domain-containing protein B OS=Dictyostelium ... [more]
ELMD2_HUMAN2.802e-1435.29ELMO domain-containing protein 2 OS=Homo sapiens G... [more]
ELMD2_MOUSE3.659e-1435.29ELMO domain-containing protein 2 OS=Mus musculus G... [more]
ELMD2_BOVIN8.151e-1435.29ELMO domain-containing protein 2 OS=Bos taurus GN=... [more]
ELMD1_BOVIN3.098e-1334.19ELMO domain-containing protein 1 OS=Bos taurus GN=... [more]
ELMD1_PONAB9.013e-1333.33ELMO domain-containing protein 1 OS=Pongo abelii G... [more]
ELMD1_HUMAN7.630e-1231.20ELMO domain-containing protein 1 OS=Homo sapiens G... [more]
ELMD1_MOUSE9.965e-1231.62ELMO domain-containing protein 1 OS=Mus musculus G... [more]
ELMOD_DICDI2.220e-1133.33Ankyrin repeat and ELMO domain-containing protein ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-548 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504060 ID=CF504060; Name=CF504060; organism=Citrus sinensis; type=EST; length=608bp
GAGTTGATGAGGATGAAATCTATTGGAGACAGAAGAAGGATGATGAGGAG
TTGGAATGGTCACAGAATTCCAGTCATGTAATTTCTCAGTTGGCTCAATG
TTTCACTAGTGCTATGGTTGGACCACGAGCATGGATAGGAGGGCTGTTTA
ACCGCTCAGCAAATAGACGTAATGAGAGGTTTCATGATTATCATTTGACT
CCTCCTCAGGAAGAGAGACTTCAAAGACTTCAAGAAAGATTACAAACTCC
TTCATGACGAGAGTCGCCCTGATCATCAAGCAGCTCTTAGAGATTTGTGG
CGCATTGCCTTTCCAAATGTTGTTCTAAATGGCATGATCTCTGAGCAATG
GAAAGACATGGGGTGGCAAGGTCCTAATCCATCAACTGACTTCAGGGGTT
GCGGATTTATTTCTCTTGAAAACTTGCTTTTCCTTGCCAAGAATTATCCG
GCATCTTTTCAGAGGTTGTTATTCAAGCAAGGGGGAAATCGAGCGACTTG
GGAGTATCCATTTGCTGTTGCTGGCATTAATGTGTCATTTATGTTGATTA
AGATGTTGGATTTATTCTCAGAAAACCACGATGTCTCCCGGGATGAATTT
GTTAGAAT
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