CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SOLTU (3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.211e-58
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI YEEVVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA
Sbjct:  189 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 293          

HSP 2 Score: 31.187 bits (69), Expect = 1.211e-58
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            KIITRQASLRVAEYA
Sbjct:  174 KIITRQASLRVAEYA 188          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.964e-57
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTPSCNIGE G+ALAEA
Sbjct:  196 FLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEDGVALAEA 300          

HSP 2 Score: 31.187 bits (69), Expect = 4.964e-57
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            KIITRQASLRVAEYA
Sbjct:  181 KIITRQASLRVAEYA 195          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.064e-49
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YAKTHGR++VSAIHKANIMQKTDGLFL+CC EVA KYPEI YE+VVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTPS NIGE GIALAEA
Sbjct:  196 FLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSMNIGEDGIALAEA 300          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.021e-36
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA  +GR++V+ IHKANIM+++DGLF+K CREV+ +YP I YEE+ IDN CM LV +P   DV+V+PNLYGDI+SDLCAGLIGGLGLTPS NIGE G A+ EA
Sbjct:  170 FQYALANGRKKVTCIHKANIMKQSDGLFVKSCREVSTRYPSIKYEELTIDNNCMQLVLDPNQMDVMVLPNLYGDIVSDLCAGLIGGLGLTPSGNIGENGSAIFEA 274          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.165e-33
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+
Sbjct:  184 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES 288          

HSP 2 Score: 23.0978 bits (48), Expect = 3.165e-33
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            K+IT +AS R+AE+A
Sbjct:  169 KLITEEASKRIAEFA 183          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.083e-33
Identity = 60/99 (60.61%), Postives = 82/99 (82.83%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG 344
            F YAK + R++V+ +HKANIM+ +DGLFL+C R++A+K+PEI +EE  +D  C+ +V+NP  +DVLVMPNLYGDI+SD+CAGL+GGLGLTPS N+G  G
Sbjct:  200 FQYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLDTVCLNMVQNPGKYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNMGLNG 298          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.991e-33
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+
Sbjct:  184 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES 288          

HSP 2 Score: 21.9422 bits (45), Expect = 6.991e-33
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            K+IT  AS R+AE+A
Sbjct:  169 KLITEAASKRIAEFA 183          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.104e-33
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+
Sbjct:  184 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES 288          

HSP 2 Score: 21.557 bits (44), Expect = 9.104e-33
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            K+IT  AS R+AE+A
Sbjct:  169 KLITEGASKRIAEFA 183          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_HUMAN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.104e-33
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+
Sbjct:  184 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES 288          

HSP 2 Score: 21.557 bits (44), Expect = 9.104e-33
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            K+IT  AS R+AE+A
Sbjct:  169 KLITEGASKRIAEFA 183          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.188e-32
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+
Sbjct:  165 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES 269          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_SOLTU1.211e-5898.103-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
IDH5_ARATH4.964e-5795.24Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
IDH6_ARATH4.064e-4988.57Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDHA_DICDI3.021e-3666.67Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_MOUSE3.165e-3360.00Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_DROME4.083e-3360.61Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH3A_BOVIN6.991e-3360.00Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_PONAB9.104e-3360.00Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_HUMAN9.104e-3360.00Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MACFA1.188e-3260.00Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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