CF504097

Overview
NameCF504097
Unique NameCF504097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:13..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504097 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.111e-32
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  117 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQ 293
            M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQ 59          

HSP 2 Score: 41.9726 bits (97), Expect = 7.111e-32
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:  413 RGSDEFKPFIRRLPEFKF 466
            RGSDEFKPFIRRLPEFKF
Sbjct:  100 RGSDEFKPFIRRLPEFKF 117          

HSP 3 Score: 39.2762 bits (90), Expect = 7.111e-32
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  343 LLGFLSPLVDPEI-EVADGPLLPTKG 417
            L+GFLSPLVDPE   V+DGP LPT+G
Sbjct:   76 LIGFLSPLVDPEAGGVSDGPSLPTRG 101          
BLAST of CF504097 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.626e-31
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  117 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYV 290
            MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSI 58          

HSP 2 Score: 45.0542 bits (105), Expect = 2.626e-31
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 1
Query:  343 LLGFLSPLVDPEIEVADGPLLPTKG 417
            L+GFLSPLVDPE+EV+DG  LPT+G
Sbjct:   76 LIGFLSPLVDPELEVSDGATLPTRG 100          

HSP 3 Score: 41.9726 bits (97), Expect = 2.626e-31
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:  413 RGSDEFKPFIRRLPEFKF 466
            RGSDEFKPFIRRLPEFKF
Sbjct:   99 RGSDEFKPFIRRLPEFKF 116          
BLAST of CF504097 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.044e-13
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 3
Query:  135 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQ 293
            D++S A  V++  H   +  Q+ LDKT PH +YRWI  L +V IY +RV++V+
Sbjct:   29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81          

HSP 2 Score: 36.1946 bits (82), Expect = 1.044e-13
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  413 RGSDEFKPFIRRLPEFKF 466
            R SDE++PF+RRLPEFKF
Sbjct:  121 RRSDEYRPFVRRLPEFKF 138          

HSP 3 Score: 27.335 bits (59), Expect = 1.044e-13
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  343 LLGFLSPLVDPEIEVADGPLLPTK 414
            ++ FLSP  DPE  +  G  LPT+
Sbjct:   98 IIAFLSPQEDPEASLTSGGSLPTR 121          
The following BLAST results are available for this feature:
BLAST of CF504097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RER1A_ARATH7.111e-3267.80Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH2.626e-3165.52Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH1.044e-1343.40Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-585 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504097 ID=CF504097; Name=CF504097; organism=Citrus sinensis; type=EST; length=486bp
CTTTAATCTCTTACAAGATCTGGTCGCATTTCAATTCGCTTCCCTCAAAT
CAATTTGAGTCCTTTTACCGTGAACATCGAAAGACTCGTTTCAAGGACTT
TTCATACTTCGATTGAATGGAAGGAATTGGAGGCGACACTGCCTCGGCGG
CATCCCCTGTATCACAATGGGGACATGATGCTTGGAGGCTATATCAGTAT
TACCTGGACAAGACTACTCCACATGCAGTTTATAGGTGGATTGGAACCCT
TGTAATTGTGGCAATCTACTGTTTGCGGGTTTTTTATGTGCAAGGATTCT
ACATCATATCCTATGGTCTTGGGATCTATCTCCTGAATTTGCTTATTGGG
GTTTTTGTCGCCTCTGGTTGATCCTGAAATCGAAGTCGCTGATGGGCCTT
TGTTGCCGACAAAGGGGTTCTGATGAATTCAAGCCTTTTATTCGCCGACT
CCCAGAGTTTAAATTTTTGGTACTCCATGACCAAGG
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