CF504107

Overview
NameCF504107
Unique NameCF504107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:121..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504107 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 61/107 (57.01%), Postives = 67/107 (62.62%), Query Frame = 3 
Query:   45 LVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 359
            LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E+ T  N                      LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:   18 LVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124
[Close]
BLAST of CF504107 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.698e-19
Identity = 58/106 (54.72%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:   45 LVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 356
            L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + +G                     LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:   18 LLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119
[Close]
BLAST of CF504107 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 45/92 (48.91%), Postives = 51/92 (55.43%), Query Frame = 3 
Query:   87 LGLPAMAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 356
            LGLP M  +   +VRC+     SK+ +                         LVDERMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:   22 LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109
The following BLAST results are available for this feature:
BLAST of CF504107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL1.892e-2557.01Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH7.698e-1954.72Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ9.738e-1448.91Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-595 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504107 ID=CF504107; Name=CF504107; organism=Citrus sinensis; type=EST; length=467bp
ATCACTGCTAGCGTAGGAACATCATCGATTACACCGCCTCGGTTCTTGTG
CACAAGCCATCCATTGTAGCTTCATCATCCCCTGTTCTTGGATTGCCAGC
AATGGCAGTGAAGGGGAAAGTGAGATGTTCGATGGAGGAAAAGCCTTCAA
AGCAAGAGAGCAAAACAAACGTGGGAATGAGTGCGTCACTGCTAGCAGCA
GCATGCGCAGCAACAATGTCAAGCCCAGCCATGGCTCTTGTTGATGAGAG
AATGAGCACTGAAGGAACAGGGCTTCCATTTGGTTTGAGCAACAACCTCC
TTGGGTGGATTCTGTTGGGTGTTTTTGGTCTCATCTGGGCCCTCTACATT
CCTTACGCTTCCAGTCTTGATGAAGATGAAGAGTCCGGATTGTCCCTCTG
ATAGTCTGAAGTCTAAAGCCAAACCCCCTGTTGGTAGAAATGTAAAGAGT
TTGGCCTTTTCCCTTAA
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