CF504179

Overview
NameCF504179
Unique NameCF504179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig524 contig Csv1_Contig524:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504179 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:  145 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLS 420
            M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +KSNSFVE VS KIRRQIEELER+SG+ES++L+
Sbjct:    1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEELERISGVESNALT 92
[Close]
BLAST of CF504179 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  145 MASRYWVVSLPV--QNSAA---SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLS 420
            MA+RYW+ +LPV   N AA   ++W RLQE IS+HSFDTPLYRF +P+LR GT           VKSN F+E VSHKIRRQIE+LER  G+E  +L+
Sbjct:    1 MATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERAGGVEPGTLT 97
The following BLAST results are available for this feature:
BLAST of CF504179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATC_ARATH1.174e-3272.83V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU2.220e-2356.70V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-667 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504179 ID=CF504179; Name=CF504179; organism=Citrus sinensis; type=EST; length=420bp
TAAAAACTTTAATGAATTACAGCTTCAAAATTGATAAAAATTCTGAAGAT
CAACCAGCATAGGCATATAGGTACTGGGTGAAACAACAAGCTCCATTATT
AACCGGACACTCAGAGCGAAAGTGAGAGTGAAAGTGATCGTGAAATGGCA
TCAAGGTACTGGGTGGTGTCTCTTCCAGTACAAAATTCAGCCGCTTCTGT
TTGGAATCGATTACAGGAACAAATCTCTAAACATTCATTTGACACTCCTC
TTTACAGGTTTAATATCCCCAACCTCCGTGTTGGAACCCTAGATTCACTC
CTTGCACTTAGCGATGATCTCGTGAAGTCAAATAGCTTTGTTGAATCAGT
ATCTCACAAGATCAGGCGACAGATTGAGGAACTGGAGAGGGTATCAGGCA
TAGAGAGTAGTTCTTTGAGT
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