CF504196

Overview
NameCF504196
Unique NameCF504196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:745..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.217e-50
Identity = 95/132 (71.97%), Postives = 115/132 (87.12%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKIN-RGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLLA 395
            PSV+ A+G LAMPESPRWLVMQGRL DAK+VLDKTSDS  E+ LRL DIK AAGIP DC+DDVVQV + N  GEGVW+ELL+RPTPAVR +++AA+GIHFFQQASGID+VVL+SPRIF+ AG+ + +++LLA
Sbjct:  204 PSVILAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLA 335          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 93/132 (70.45%), Postives = 112/132 (84.85%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLLA 395
            PSV  A+G LAMPESPRWLVMQGRL DA KVLDKTS++KEE++ RL DIK A GIP+D  DDV+ VP K + G+GVWK+LLVRPTP+VRHI++A +GIHF QQASGID+VVLYSP IF +AG+ SKN++LLA
Sbjct:  194 PSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSKNDQLLA 325          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 93/132 (70.45%), Postives = 112/132 (84.85%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLLA 395
            PSV  A+G LAMPESPRWLV+QGRL DA KVLDKTS++KEE++ RL DIK A GIP+D  DDV+ VP K + G+GVWK+LLVRPTP+VRHI++A +GIHF QQASGID+VVLYSP IF KAG+ SKN++LLA
Sbjct:  194 PSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSKNDQLLA 325          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 79/131 (60.31%), Postives = 103/131 (78.63%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLL 392
            PS++ A G L MPESPRWL+MQGRL + K++L+  S+S EE+ LR  DIK AAGI   C DDVV++  K   GEGVWKEL++RPTPAVR +++ A+GIHFFQ ASGI++V+LY PRIF+KAGIT+K++  L
Sbjct:  185 PSLVLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDVVKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAGITTKDKLFL 315          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.905e-33
Identity = 71/132 (53.79%), Postives = 98/132 (74.24%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIP-EDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLLA 395
            PS++ A G   MPESPRWLVMQGRL +AKK++   S+++EE+  R  DI  AA +   +  +    V K N G+ VW+EL+++P PAVR I++AAVGIHFF+ A+GI++VVLYSPRIF+KAG+ SK++ LLA
Sbjct:  190 PSLILAFGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGGVKKKNHGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVSKDKLLLA 321          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKNEKLLA 395
            PSV        +PESPRWLVM+GR+  A++VL KT++  +E+  RLA+I+ AA   E   D             VW+ELL  P+P VR +++   GI  FQQ +GID+ V YSP I ++AGI  + + L A
Sbjct:  223 PSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKTNERDDEAEERLAEIQLAAAHTEGSED-----------RPVWRELL-SPSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAA 341          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.938e-13
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGI 368
            P+VL  +G   MPESPRWLV +G   +A+++++ T D K+  M  LA++K+             +  K     GV K   +RP      +++  VG+  FQQA GI++V+ Y+P IF KAG+
Sbjct:  172 PAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEM-ELAEMKQG------------EAEKKETTLGVLKAKWIRP------MLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGL 274          
BLAST of CF504196 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 3
Query:    3 PSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAG 365
            PS+L  +G L MPESPRWL   G  + AKK+L+K   +K+     + DIKEA                  + EG  KEL     P VR  ++A +G+ F QQ  G ++++ Y+P+ F   G
Sbjct:  171 PSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQ-EIHDIKEAE----------------KQDEGGLKELF---DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVG 271          
The following BLAST results are available for this feature:
BLAST of CF504196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PLT5_ARATH6.217e-5071.97Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH9.925e-4870.45Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT1_ARATH9.925e-4870.45Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT6_ARATH9.948e-4060.31Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT3_ARATH6.905e-3353.79Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT4_ARATH5.133e-2041.98Probable polyol transporter 4 OS=Arabidopsis thali... [more]
CSBC_BACSU7.938e-1336.07Probable metabolite transport protein csbC OS=Baci... [more]
YWTG_BACSU8.776e-1235.54Putative metabolite transport protein ywtG OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-684 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504196 ID=CF504196; Name=CF504196; organism=Citrus sinensis; type=EST; length=395bp
TTCCGTCGGTGCTTCCCGCCGTCGGCGCGTTAGCCATGCCAGAATCTCCG
CGCTGGCTGGTGATGCAAGGCCGACTCGCCGATGCAAAGAAAGTTCTCGA
CAAAACCTCGGACTCGAAAGAGGAGTCTATGCTCAGACTCGCCGATATCA
AAGAAGCAGCCGGCATTCCTGAAGACTGCAACGACGACGTCGTTCAAGTA
CCGAAAATCAACCGTGGCGAAGGCGTATGGAAAGAGCTGCTGGTCCGTCC
TACACCGGCTGTTCGTCACATCATAGTCGCAGCCGTTGGTATTCATTTCT
TCCAACAAGCATCCGGCATAGACTCTGTCGTTCTGTACAGTCCTAGAATC
TTTGAAAAAGCTGGGATTACGTCAAAAAACGAGAAGTTACTCGCT
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