CF504213

Overview
NameCF504213
Unique NameCF504213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9634 contig Csv1_Contig9634:318..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 95/112 (84.82%), Postives = 109/112 (97.32%), Query Frame = -1
Query:  205 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 540
            RLVRELEKKFSGK+VVLIATRRI+RPPKKGSAVQ PRSRTLTAVHDAMLED+VYPAEIVGKRVRYRLDGSKI+K+FLDPK +N+TE KLE+F+GVYRKL+GKDVVF++P+T+
Sbjct:   79 RLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = -1
Query:  205 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 540
            RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV  PR+RTLTAVHD +LEDVVYPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS VYR+L GKDVVFDYP+T+
Sbjct:   79 RLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTE 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.585e-49
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = -1
Query:  205 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 540
            RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV  PR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDP ERNNTEYKL++F+ VYR+L GKDVV++YP+ +
Sbjct:   79 RLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAE 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.682e-49
Identity = 92/113 (81.42%), Postives = 108/113 (95.58%), Query Frame = -1
Query:  202 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 540
            RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA + PR+RTLT+VH+A+L+DVV PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS VY+KLTGKDVVF++PIT+A
Sbjct:   79 RLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.986e-49
Identity = 90/113 (79.65%), Postives = 105/113 (92.92%), Query Frame = -1
Query:  205 SRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 543
            SRLVRELEKKFSG DV+ +ATRRI+RPPKKGSAVQ PR+RTLT+VH+AMLEDV YPAEIVGKR RYR+DG+KI+K++L+PKERNNTEYKLE+  GVYRKLTGKDVVF+YP+ D
Sbjct:   78 SRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = -1
Query:  205 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 540
            RLVRELE+  SGKDVV +ATRRIVRPPKKGSAVQ PR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDG+K+IKI+LDPKERNNTEYKLE+FS VYR+L GKDVVF+YP+ +
Sbjct:   79 RLVRELER-VSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAE 189          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.355e-47
Identity = 88/110 (80.00%), Postives = 102/110 (92.73%), Query Frame = -1
Query:  211 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 540
            RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AVQ PR+RTLT+VH+AMLEDV +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  GVYRKLTGKDVVF+YP+
Sbjct:   79 RLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.355e-47
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = -1
Query:  202 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 540
            RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAVQ PR+RTLT+VH+AMLEDV YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  GVYRKLTGKDVVF+YP+ +A
Sbjct:   79 RLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.480e-36
Identity = 74/113 (65.49%), Postives = 95/113 (84.07%), Query Frame = -1
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+VYP+EIVG+R+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.727e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+VYP+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDVVF++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
The following BLAST results are available for this feature:
BLAST of CF504213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_AVIMR4.234e-5084.8240S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS7_ORYSJ5.530e-5085.7140S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_SECCE3.585e-4983.0440S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS71_ARATH4.682e-4981.4240S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_BRAOL7.986e-4979.6540S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS7_HORVU1.967e-4782.1440S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS73_ARATH3.355e-4780.0040S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS72_ARATH3.355e-4778.7640S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS7_XENLA3.480e-3665.4940S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_ICTPU1.727e-3564.6040S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-702 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504213 ID=CF504213; Name=CF504213; organism=Citrus sinensis; type=EST; length=543bp
AGACATGATGTTTCTCAGCTCAACAATTTCACAAAATGAAGAAACAAAAA
GAAATTCATAAAGCTTCATCTGTCCTATGCAAAATGATGTCATACCAAAT
TTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAATTATAGTG
CAACAAAATAAACAGTGACAAACACAAATGATCGTCTGCAACAACTCTTC
AGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGGTAAGCTTT
CTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTGTTCCTCTC
CTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAGACGGTATC
TGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTTCAAGCATG
GCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGGCTCTGAACAGCAGA
GCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAGTACCACAT
CCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAGA
back to top