CF504216

Overview
NameCF504216
Unique NameCF504216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:485..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 5.615e-60
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 351
            CYSNFNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLRTQLASAK
Sbjct:  648 CYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.383e-58
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 351
            CYSNFNDIIHSIIDMDADV+TIENSRS EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL+TNILWVNPDCGLKTRKY EVKPAL NMV+AAKL+RTQLASAK
Sbjct:  649 CYSNFNDIIHSIIDMDADVMTIENSRSSEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.863e-58
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 351
            CYS+FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGLKTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct:  649 CYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.208e-56
Identity = 107/117 (91.45%), Postives = 111/117 (94.87%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 351
            CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEE+ADRI KMLAVLE+N+LWVNPDCGLKTRKY EV PALSNMVAAAK LR +LASAK
Sbjct:  649 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.851e-33
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS FNDII SI +MDADVITIE SRSD +LL  F +G +Y   IGPGVYDIHSP IP+ E I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR++L
Sbjct:  652 CYSEFNDIIASIAEMDADVITIETSRSDMELLDAF-DGFRYPNEIGPGVYDIHSPNIPTQEHIVGLMRKAAERIPAQRLWVNPDCGLKTRRWAEVLPALTNMVAAAKTLRSEL 763          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURS3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.980e-33
Identity = 72/113 (63.72%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS FNDII SI DMDADVITIE SRSD +LL  F +  KY   IGPGVYDIHSP IP+ E I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR Q+
Sbjct:  652 CYSEFNDIIASIADMDADVITIETSRSDMELLDAF-DNFKYPNEIGPGVYDIHSPNIPTQEHIVGLMKKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKTLRNQV 763          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.702e-32
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS FNDII SI DMDADVITIE SRSD +LL  F +  KY   IGPGVYDIHSP IP+ + I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK+LR Q+
Sbjct:  652 CYSEFNDIIASIADMDADVITIETSRSDMELLDAF-DTFKYPNEIGPGVYDIHSPNIPTQDHIVGLMRKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKMLRNQV 763          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.223e-32
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS+FNDIIH+I  MDADVITIE SRS  KLL+VF     Y   IGPG+YDIHSPR+PS EE+ ++I  ++ VL  + LW+NPDCGLKTRK+ E++ +LSNMV AA+ +R  L
Sbjct:  647 CYSDFNDIIHTIEKMDADVITIETSRSGNKLLTVFATR-GYKNEIGPGIYDIHSPRVPSVEELEEKIRNLMLVLPPSKLWINPDCGLKTRKWDEIRWSLSNMVKAAQHIRLGL 758          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_PSYIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Psychromonas ingrahamii (strain 37) GN=metE PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.904e-32
Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CYS FNDII +I  MDADVITIE SRSD  LL VF E   Y  GIGPGVYDIHSP IP  E++   + K    +    LWVNPDCGLKTR++ EVKPAL NMVAAAK LR
Sbjct:  657 CYSEFNDIIAAIAQMDADVITIETSRSDMVLLDVF-EAFSYPNGIGPGVYDIHSPNIPDVEQMVSLMKKAALRIPAEQLWVNPDCGLKTRRWEEVKPALLNMVAAAKKLR 765          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.792e-32
Identity = 71/113 (62.83%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS FNDII SI DMDADVITIE SRSD +LL  F +  KY   IGPGVYDIHSP IP+ + I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR Q+
Sbjct:  652 CYSEFNDIIASIADMDADVITIETSRSDMELLDAF-DTFKYPNEIGPGVYDIHSPNIPTQDHIVGLMKKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKTLRNQV 763          
The following BLAST results are available for this feature:
BLAST of CF504216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_SOLSC5.615e-6097.445-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.383e-5894.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH6.863e-5893.165-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR2.208e-5691.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG5.851e-3362.835-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURS39.980e-3363.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC1.702e-3262.835-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM2.223e-3260.185-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSYIN2.904e-3264.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH3.792e-3262.835-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-705 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504216 ID=CF504216; Name=CF504216; organism=Citrus sinensis; type=EST; length=437bp
TGCTACTCCAACTTCAACGACATTATCCACTCAATTATCGACATGGATGC
TGATGTGATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTGTCTG
TCTTCCGTGAGGGAGTCAAGTATGGTGCTGGAATTGGCCCTGGTGTGTAT
GACATCCACTCTCCAAGAATACCATCAACTGAAGAAATTGCTGACAGAAT
CAACAAGATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTG
ACTGTGGTCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCA
AACATGGTCGCTGCTGCCAAGCTACTCCGCACCCAGCTTGCCAGTGCCAA
GTGAGTGGTTCTGGAGATTGGAGGGATACTTCCTGAGCCATTGATTTTTT
TTTTTTTCACTTTAAACAAAGAAAGAAAATTCCTGTC
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