CF504303

Overview
NameCF504303
Unique NameCF504303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504303_ssr301 microsatellite CF504303_ssr301:301..312. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504303_ssr405 microsatellite CF504303_ssr405:405..416. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12961 contig Csv1_Contig12961:10..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504303 vs. ExPASy Swiss-Prot
Match: PCY2_DICDI (Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  295 TRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVGG 414
            T   KKP+RVY+DGCFD+MH+GH NALRQAR LGD LV G
Sbjct:    3 TTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVG 42
The following BLAST results are available for this feature:
BLAST of CF504303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PCY2_DICDI4.360e-1172.50Ethanolamine-phosphate cytidylyltransferase OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-792 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504303 ID=CF504303; Name=CF504303; organism=Citrus sinensis; type=EST; length=419bp
CCCCCGGGCTGCAGGCCAAAAAGGGAAAAAGAGAGAAATAAAAGGGGGAA
GACAAAAGAAGGGCATCCGATATTAGTGGAAAGCAAAAGAAACCACGGAA
TGGGAATTGGAATGGAATAGAAGTGATTGATATTTTGCAGTTGGATTTCA
TAAAGGAAAAAAATGATATCGGAGGGAAAGGAACAGTCAGCACGGATATT
GGCGACGTGCTTAATTGCCGGAGCCGTGATGGTGGCCGGATTTTCGTTGT
TAACTCTCTACTTAGCAGCTCCAAATGACAGGTGGTTACAATGGACTAGA
AAGAAGAAGAAGCCGGTACGGGTTTACATGGACGGTTGCTTCGACATGAT
GCACTACGGCCATTGCAACGCGCTCCGTCAGGCGCGTGCCCTTGGGGATC
AGTTGGTGGGTGGGTGTTT
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