CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504307_ssr54 microsatellite CF504307_ssr54:54..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.053e-28
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP +L DV +H+DI+ T+++  S NR+PH+L YGPPGTGKTSTILA ARK+YG  Y N ++ELNASDDRGID
Sbjct:   24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQLMELNASDDRGID 101          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.979e-27
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L D+ AH DI  TI +L   N LPHLL YGPPGTGKTSTI A+ARKLYG  Y  M+LELNASDDRGID
Sbjct:   25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGID 102          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.520e-27
Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGID 464
            PWVEKYRPQ+LAD+ +H+DI+ TI +  SE+RLPHLLLYGPPGTGKTSTILA A++LY   ++ +M+LELNASDDRGID
Sbjct:   20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGID 98          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 55/83 (66.27%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGID 464
            I+  PWVEKYRPQ+L D+ +H+DI+ TI +  +E+RLPHLLLYGPPGTGKTSTILA A++LY   ++ +M+LELNASDDRGID
Sbjct:   17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGID 99          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP +L +VA H  ++ TI +   E +LPHLL +GPPGTGKT+TI+AVAR++YG  Y NMILELNASD+RGID
Sbjct:   18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRNMILELNASDERGID 95          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L +V    +++ T+ +   E +LPHLL YGPPGTGKTSTI+A+AR++YG  Y NM+LELNASDDRGID
Sbjct:   14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 3.615e-21
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNASDDRGID 464
            PWVEKYRP  L ++ AH  IV T+ +      LPHLL YGPPGTGKT+T+LA AR++Y   +  +M+LELNASD+RGID
Sbjct:   30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGID 108          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.060e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  162 NLKPKDNGKNVIVSGTPPDIKAS-----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461
            NLK +        S   P  K       PWVEKYRP++L++V A  + +  + R    + LPH+L YGPPGTGKTSTILA+A++LYG +   + +LELNASD+RGI
Sbjct:    6 NLKARQQAAAQASSSKTPTSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGI 111          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+SL D+   +DIV+ + R   +  +PHLL  GPPGTGKT+  LA+   LYG  Y    LELNASD+RGID
Sbjct:    9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYRQYFLELNASDERGID 85          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.591e-19
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  195 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            I S T P  K  PWVEKYRPQ +  + ++RDI+ ++ +      LPHLL +GP G+GKTSTI   AR++YG   + MILELNAS++RGI+
Sbjct:    7 IASRTEPK-KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGKYINYMILELNASNERGIE 95          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFC3_SCHPO3.053e-2867.95Replication factor C subunit 3 OS=Schizosaccharomy... [more]
RFC5_DICDI1.979e-2771.79Probable replication factor C subunit 5 OS=Dictyos... [more]
RFC5_MOUSE7.520e-2770.89Replication factor C subunit 5 OS=Mus musculus GN=... [more]
RFC5_HUMAN4.874e-2666.27Replication factor C subunit 5 OS=Homo sapiens GN=... [more]
RFC3_ARXAD6.366e-2665.38Replication factor C subunit 3 OS=Arxula adeninivo... [more]
RFC3_YEAST1.852e-2562.82Replication factor C subunit 3 OS=Saccharomyces ce... [more]
RFC5_CAEEL3.615e-2158.23Probable replication factor C subunit 5 OS=Caenorh... [more]
RFC2_PHANO3.060e-2047.17Replication factor C subunit 2 OS=Phaeosphaeria no... [more]
RFCS_SULTO1.984e-1954.55Replication factor C small subunit OS=Sulfolobus t... [more]
RFCS3_MIMIV2.591e-1951.11Putative replication factor C small subunit L499 O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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