CF504316

Overview
NameCF504316
Unique NameCF504316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.523e-14
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA K              HV S   C VCKE + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  206 PADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3
Query:  228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  220 HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.771e-13
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.619e-13
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  207 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.726e-13
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3
Query:  228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.062e-13
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            HV     C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.825e-12
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 3
Query:  249 CAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            CAVCK+   +G   +++PC H YH DCI+PWL  RNSCPVCR +L
Sbjct:  257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 3
Query:  240 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            +  C+VCKE  E G + R +PCKH +HE+CIL WLK  NSCP+CR EL
Sbjct:   67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11
Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 3
Query:  129 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            L  +D T   +    PASK                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR EL
Sbjct:   39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHEL 123          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 3
Query:  129 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            L  +D T   +    PA+K                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR EL
Sbjct:   39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123          
The following BLAST results are available for this feature:
BLAST of CF504316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RN126_MOUSE9.523e-1442.86RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN126_XENTR1.624e-1350.00RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN2.771e-1341.43RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN3.619e-1341.43RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
R126A_XENLA4.726e-1350.00RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA8.062e-1348.08RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
CIP8_ARATH6.825e-1257.78E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_DROME8.914e-1258.33E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
RN181_XENLA1.164e-1137.65E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_XENTR1.986e-1136.47E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-805 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504316 ID=CF504316; Name=CF504316; organism=Citrus sinensis; type=EST; length=384bp
ACAGTAGCGGCAGCAGCTTTGATCTGTACTATGAGGACGGTCAGGGGTCA
GAGTCAACTCTAAGGCCGATACCAGAAAGAGTTTTAGGGTTCTTGATGGA
TTCAGGATTTCATCTGTTACTTCATCAACTGTCTCAGATTGATCTAACGG
CGCTATCCCGGCCGGAGAATCTGCCGGCATCAAAAGCTTCGATCGAGTCG
ATGCCAAGCATAGAGATTTCGTCAGGCCACGTAAGTTCAGAGTGTCACTG
TGCAGTATGTAAAGAGGCGTTTGAGCTTGGAAACGAGGCGAGAGAGATGC
CGTGCAAGCATATATACCATGAAGATTGTATTCTCCCGTGGCTCAAAATG
CGAAACTCGTGCCCGGTTTGCAGGCAAGAGCTAC
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