CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12112 contig Csv1_Contig12112:462..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIAS_BOVIN (Lipoyl synthase, mitochondrial OS=Bos taurus GN=LIAS PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.796e-28
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV  LKE  P +L+E L PDFRG
Sbjct:  128 ATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKERNPKILVECLTPDFRG 218          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIAS_MOUSE (Lipoyl synthase, mitochondrial OS=Mus musculus GN=Lias PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.500e-27
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+AD G+ H A+TV  LKE  P +L+E L PDFRG
Sbjct:  127 ATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRG 217          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIAS_HUMAN (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 4.365e-27
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG
Sbjct:  128 ATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRG 218          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SCHPO (Lipoyl synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC8D2.15 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.701e-27
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GDTCTRGCRFC+VKTSR           N AEAI  W L Y+V+TSVDRDDL D G+ H A+T++K+KE  P++L+EAL PDF G
Sbjct:  122 ATIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDFSG 212          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIP5_YEAST (Lipoyl synthase, mitochondrial OS=Saccharomyces cerevisiae GN=LIP5 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.701e-27
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM+LGDTCTRGCRFC+VKT+R           N AEAI  WGL YVV+T+VDRDDL D G+ H A+TVRK+K+  PN L+E L  DFRG
Sbjct:  172 ATIMLLGDTCTRGCRFCSVKTNRTPSKPDPMEPENTAEAIKRWGLGYVVLTTVDRDDLVDGGANHLAETVRKIKQKAPNTLVETLSGDFRG 262          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIAS_RAT (Lipoyl synthase, mitochondrial OS=Rattus norvegicus GN=Lias PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.701e-27
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GDTCTRGCRFC+VKT+R           N A AIA WGLDYVV+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG
Sbjct:  127 ATIMLMGDTCTRGCRFCSVKTARNPPPLDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTPDFRG 217          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ANADF (Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=lipA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.233e-26
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT+M++GD CTRGCRFCNVKT             ++AEAIA  GLDY+V+TSVDRDDL D G+GHFA  +R+LK++ P +L+E L PDFRG
Sbjct:   52 ATVMLMGDVCTRGCRFCNVKTDAHPPPLDPDEPRHLAEAIAELGLDYIVVTSVDRDDLPDGGAGHFADAIRRLKDI-PQLLVEVLTPDFRG 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.129e-25
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G
Sbjct:   57 ATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQG 146          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HALS3 (Probable lipoyl synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lipA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.129e-25
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G
Sbjct:   57 ATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQG 146          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ANADE (Lipoyl synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lipA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.970e-25
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT+M++GD CTRGCRFCNVKT+            ++A AIA  GLDY+V+TSVDRDDL D G+ HFA  +R+LKE+ P +L+E L PDFRG
Sbjct:   52 ATVMLMGDVCTRGCRFCNVKTAAHPPALDPDEPRHLAAAIAELGLDYIVVTSVDRDDLPDGGAAHFADAIRRLKEI-PGLLVEVLTPDFRG 141          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIAS_BOVIN8.796e-2862.64Lipoyl synthase, mitochondrial OS=Bos taurus GN=LI... [more]
LIAS_MOUSE1.500e-2762.64Lipoyl synthase, mitochondrial OS=Mus musculus GN=... [more]
LIAS_HUMAN4.365e-2761.54Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
LIPA_SCHPO5.701e-2759.34Lipoyl synthase, mitochondrial OS=Schizosaccharomy... [more]
LIP5_YEAST5.701e-2761.54Lipoyl synthase, mitochondrial OS=Saccharomyces ce... [more]
LIAS_RAT5.701e-2761.54Lipoyl synthase, mitochondrial OS=Rattus norvegicu... [more]
LIPA_ANADF8.233e-2658.24Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw... [more]
LIPA_HALSA3.129e-2557.14Probable lipoyl synthase OS=Halobacterium salinari... [more]
LIPA_HALS33.129e-2557.14Probable lipoyl synthase OS=Halobacterium salinaru... [more]
LIPA_ANADE6.970e-2557.14Lipoyl synthase OS=Anaeromyxobacter dehalogenans (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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