CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504319_ssr2 microsatellite CF504319_ssr2:2..11. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13665 contig Csv1_Contig13665:42..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.108e-56
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 38.891 bits (89), Expect = 1.108e-56
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLTFTKLFSRLFAKKEM
Sbjct:    1 MGLTFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 3.201e-56
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 37.3502 bits (85), Expect = 3.201e-56
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+FTKLFSRLFAKKEM
Sbjct:    1 MGLSFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 3.201e-56
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 37.3502 bits (85), Expect = 3.201e-56
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+FTKLFSRLFAKKEM
Sbjct:    1 MGLSFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 3.201e-56
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDE 115

HSP 2 Score: 38.891 bits (89), Expect = 3.201e-56
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLTFTKLFSRLFAKKEM
Sbjct:    1 MGLTFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 3.201e-56
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDE 115

HSP 2 Score: 38.891 bits (89), Expect = 3.201e-56
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLTFTKLFSRLFAKKEM
Sbjct:    1 MGLTFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.206e-55
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 35.4242 bits (80), Expect = 1.206e-55
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+F KLFSRLFAKKEM
Sbjct:    1 MGLSFAKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 2.049e-55
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 34.6538 bits (78), Expect = 2.049e-55
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+F KLFSRLFAKKEM
Sbjct:    1 MGLSFGKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 2.229e-54
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

HSP 2 Score: 37.3502 bits (85), Expect = 2.229e-54
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+FTKLFSRLFAKKEM
Sbjct:    1 MGLSFTKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 6.437e-54
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDE 115

HSP 2 Score: 32.3426 bits (72), Expect = 6.437e-54
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+FTKL  RLF+KKEM
Sbjct:    1 MGLSFTKLLGRLFSKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 8.391e-54
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDE 115

HSP 2 Score: 30.8018 bits (68), Expect = 8.391e-54
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL FTK  SRLF KKEM
Sbjct:    1 MGLRFTKALSRLFGKKEM 18
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF_MAIZE1.108e-5696.04ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF_VIGUN3.201e-5696.04ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA3.201e-5696.04ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF2_ORYSJ3.201e-5695.05ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ3.201e-5695.05ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF2_ARATH1.206e-5596.04ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH2.049e-5596.04ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_CATRO2.229e-5493.07ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_SALBA6.437e-5495.05ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CHLRE8.391e-5495.05ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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