CF504419

Overview
NameCF504419
Unique NameCF504419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10478 contig Csv1_Contig10478:26..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LUC7L_DICDI (Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   76 MDAMRKQLDVLMGANRN---GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKM-DMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRL 390
            MDA+R QLD  +G +RN    D  +V   + D D+C+ +L GLCPHELF    + D+GPC K+H     K+Y+  K K   +Y+RE    I+ LI + D+KI R  +RL
Sbjct:    1 MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPCSKLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERL 109          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LUC7_SCHPO (U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe GN=usp106 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   88 RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRLE 393
            RK ++ LMG+N +         + DR VCR +L G+CPH++F  TKMD+GPCPK+HS +L+ +YE A       Y+ +  + ++R + +C+++I  A  R E
Sbjct:    6 RKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKLKSDYERASYSHDYGYEWDYLEDLERHVDDCNKRIDIAEARRE 107          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L2_HUMAN (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   85 MRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRLED 396
            MR  LD LMG +R+GD      K+ D  VC+ +L   CPH++   T+MD+G C KVH L LR +YE A  +    ++ +  D +   I +CDR+   A KRL +
Sbjct:    7 MRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAE 110          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LUC7L_MOUSE (Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   85 MRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRLED 396
            MR  LD LMG  R+GD      K+ D  VC+ +L   CPH++   T+MD+G C K+H L LR +YE A  +    ++ +  D ++  I ECDR+   A KRL +
Sbjct:    7 MRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAE 110          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LUC7L_HUMAN (Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   85 MRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRLED 396
            MR  LD LMG  R+GD      K+ D  VC+ +L   CPH++   T+MD+G C K+H L LR +YE A  +    ++ +  D ++  I ECDR+   A KRL +
Sbjct:    7 MRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAE 110          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L2_MOUSE (Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   85 MRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRLED 396
            MR  LD LMG +R+GD      K+ D  VC+ +L   CPH++   T+MD+G C KVH L LR +YE A  +    ++ +  D +   I +CDR+   + KRL +
Sbjct:    7 MRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAE 110          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L3_PONAB (Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   97 LDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRL 390
            LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K+H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL
Sbjct:    8 LDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARL 107          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L3_MOUSE (Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   97 LDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRL 390
            LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K+H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL
Sbjct:    8 LDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARL 107          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L3_HUMAN (Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   97 LDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRL 390
            LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K+H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL
Sbjct:    8 LDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARL 107          
BLAST of CF504419 vs. ExPASy Swiss-Prot
Match: LC7L3_BOVIN (Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   97 LDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIGECDRKIGRALKRL 390
            LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K+H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL
Sbjct:    8 LDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARL 107          
The following BLAST results are available for this feature:
BLAST of CF504419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LUC7L_DICDI1.194e-1642.20Luc7-like protein OS=Dictyostelium discoideum GN=c... [more]
LUC7_SCHPO2.037e-1638.24U1 snRNP-associated protein usp106 OS=Schizosaccha... [more]
LC7L2_HUMAN7.741e-1639.42Putative RNA-binding protein Luc7-like 2 OS=Homo s... [more]
LUC7L_MOUSE1.320e-1539.42Putative RNA-binding protein Luc7-like 1 OS=Mus mu... [more]
LUC7L_HUMAN1.320e-1539.42Putative RNA-binding protein Luc7-like 1 OS=Homo s... [more]
LC7L2_MOUSE1.725e-1538.46Putative RNA-binding protein Luc7-like 2 OS=Mus mu... [more]
LC7L3_PONAB2.490e-1440.00Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2... [more]
LC7L3_MOUSE2.490e-1440.00Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1... [more]
LC7L3_HUMAN2.490e-1440.00Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1... [more]
LC7L3_BOVIN2.490e-1440.00Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-908 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504419 ID=CF504419; Name=CF504419; organism=Citrus sinensis; type=EST; length=411bp
CTATTAACTCCAAAATCTCGAAAGCTCACAAACCCTAGTTCTGAGTCTCG
AGTGCTCGACTCTCATTCTGACAAAATGGACGCAATGAGGAAGCAACTAG
ACGTCCTGATGGGAGCCAATCGAAACGGCGACGTACGAGAAGTTAATCGC
AAGTACTACGATCGCGATGTTTGCCGTCTCTACTTGGCCGGACTTTGCCC
TCACGAGCTCTTCCAATTAACGAAAATGGATATGGGGCCATGTCCGAAGG
TTCATTCTTTGCAGTTGCGAAAAGAATATGAAGAAGCCAAGGCAAAAGGC
GTTGATAATTATGACAGAGAATTAGAAGATGCTATTGATAGACTTATTGG
TGAGTGTGATAGGAAAATTGGTAGAGCTCTTAAACGTCTTGAAGATGACG
ATGCAAAGGCT
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