CF504445

Overview
NameCF504445
Unique NameCF504445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length201
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.956e-16
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGR 200
            G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+     S           PGQ YYGR
Sbjct:  131 GDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGR 197          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.916e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGR 200
            G+  +RKRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGR
Sbjct:   48 GSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGR 114          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.916e-14
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXLPGQYYGR 200
            G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q SP +              +YYGR
Sbjct:  111 GDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGR 177          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GR
Sbjct:  125 GDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGR 191          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GR
Sbjct:  121 GDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGR 187          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GR
Sbjct:  113 GDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGR 179          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GR
Sbjct:  126 GDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGR 192          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.268e-14
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GR
Sbjct:  115 GDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGR 181          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGR 200
            G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGR
Sbjct:  122 GDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGR 187          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVS 134
            G++ MRKREIAAF  QT HETTGGW DAP G YAWGYCY+++++
Sbjct:  135 GDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN 178          
The following BLAST results are available for this feature:
BLAST of CF504445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI3_TOBAC5.956e-1658.21Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIT_CARPA1.916e-1450.75Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_VITVI1.916e-1456.72Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI4_SOLTU2.502e-1453.73Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC2.502e-1453.73Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_SOLTU2.502e-1453.73Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_TOBAC2.502e-1453.73Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_SOLTU4.268e-1453.73Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PHAVU5.575e-1451.52Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI6_POPTR5.575e-1468.18Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-934 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504445 ID=CF504445; Name=CF504445; organism=Citrus sinensis; type=EST; length=201bp
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACT
ACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGA
G
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