CF504450
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 4.992e-31 Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 2 Query: 5 NGSTPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAG 346 +GSTPL+ LSKP S P + + P I+AMK MQGRVVCA+SDKTVAVEVVRL PHP QAHDP+NQF+VGD+V+LEKSRPISKTKSF+A+ + R A K AG Sbjct: 21 HGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARKAEAG 134
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.134e-25 Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 2 Query: 20 LTRLSKPPSTPQNLPYSS---FPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGES 352 L R S P S+PQ + FP IKAMK M+G+VVCAS +KTVAVEV RL PHP QAHDPEN F+VGD+VQL K+RPISK K+F+AV P R + K AG S Sbjct: 11 LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK--AGSS 122
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.235e-22 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2 Query: 11 STPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 340 S+P +S PP + +I+A +++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L+ SRPISKTK F+A+ +PPR+ +K+ Sbjct: 5 SSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114
BLAST of CF504450 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21 Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 80 QIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 340 +I+A K++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L +SRPISKTK F+AV +PPR+ +K+ Sbjct: 33 RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS 119 The following BLAST results are available for this feature:
BLAST of CF504450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504450 ID=CF504450; Name=CF504450; organism=Citrus sinensis; type=EST; length=362bpback to top |