CF504451

Overview
NameCF504451
Unique NameCF504451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length300
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504451 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 3 
Query:    3 SLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTNDS-HYPSQKNVVSGNKRGFSDAMDGFSEGK 224
            +++LKATEL LGLPGSQSP R +EL LL PA+L EKP FPL P+ D     SQKN  SGNKRGFSD MD F+E K
Sbjct:   60 TISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAK 134
[Close]
BLAST of CF504451 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:    3 SLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTND--SHYPSQKNVVSGNKRGFSDAMDGFS 215
            +LN KATELRLGLP SQSPER ++  LL P    EK LFPL P+ D  S     KNVVSGNKRGF+D  D FS
Sbjct:   46 NLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFS 118
The following BLAST results are available for this feature:
BLAST of CF504451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH7.527e-1965.33Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH2.960e-1561.64Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-940 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504451 ID=CF504451; Name=CF504451; organism=Citrus sinensis; type=EST; length=300bp
GCAGTCTGAATCTCAAGGCTACAGAGCTGAGGCTCGGACTTCCTGGGTCC
CAGTCTCCAGAGAGAGGTTCGGAACTCTGCCTCCTAGGTCCTGCGCAACT
GGGTGAGAAGCCATTGTTCCCTTTGCATCCAACAAATGATAGCCACTACC
CATCACAGAAGAATGTTGTTTCTGGAAACAAAAGGGGGTTCTCTGATGCT
ATGGATGGGTTCTCAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTC
ACCCAGGGCTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGA
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