CF504464 | Citrus Genome Database

Overview


Name	CF504464
Unique Name	CF504464
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	384

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.314e-57
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            IQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY
Sbjct:  142 IQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 229

HSP 2 Score: 67.0106 bits (162), Expect = 1.314e-57
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT
Sbjct:  103 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 134

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.450e-57
Identity = 80/88 (90.91%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            IQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY
Sbjct:  142 IQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 229

HSP 2 Score: 67.0106 bits (162), Expect = 6.450e-57
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT
Sbjct:  103 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 134

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.378e-57
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 3

Query:  129 GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            G+ H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LY
Sbjct:  146 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 230

HSP 2 Score: 66.2402 bits (160), Expect = 9.378e-57
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS+DNRQIVSASRDRTIKLWNT
Sbjct:  103 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134

HSP 3 Score: 25.409 bits (54), Expect = 9.378e-57
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 2

Query:   98 LGECKYTDSRGRRSH 142
            LGECKYT S G   H
Sbjct:  135 LGECKYTISEGGEGH 149

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.027e-55
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 3

Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LY
Sbjct:  143 IQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLY 230

HSP 2 Score: 61.2326 bits (147), Expect = 2.027e-55
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS DNRQIVSASRD++I+LWNT
Sbjct:  104 GHTKDVLSVAFSADNRQIVSASRDKSIRLWNT 135

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.884e-55
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 3

Query:  129 GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            G+ H +WVSCVRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LY
Sbjct:  146 GEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 230

HSP 2 Score: 66.2402 bits (160), Expect = 2.884e-55
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS+DNRQIVSASRDRTIKLWNT
Sbjct:  103 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134

HSP 3 Score: 25.409 bits (54), Expect = 2.884e-55
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 2

Query:   98 LGECKYTDSRGRRSH 142
            LGECKYT S G   H
Sbjct:  135 LGECKYTISEGGEGH 149

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.491e-55
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 3

Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LY
Sbjct:  143 IQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLY 230

HSP 2 Score: 62.7734 bits (151), Expect = 4.491e-55
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS+DNRQIVSASRD++I+LWNT
Sbjct:  104 GHTKDVLSVAFSVDNRQIVSASRDKSIRLWNT 135

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.727e-48
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3

Query:  120 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            I E + HTEWVSCVRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLY
Sbjct:  143 IGEPEGHTEWVSCVRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLY 230

HSP 2 Score: 63.929 bits (154), Expect = 4.727e-48
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS+DNRQIVS SRD+TIKLWNT
Sbjct:  104 GHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 135

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.564e-46
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 3

Query:  126 EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            + D+HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY
Sbjct:  143 QDDSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 228

HSP 2 Score: 62.3882 bits (150), Expect = 5.564e-46
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS DNRQIVS SRD+TIKLWNT
Sbjct:  103 GHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT 134

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.605e-45
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 3

Query:  126 EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            + D HT+W SCVRFSPNT  P IVS+ WDR VKVWNL+NCKL+    GHTGYVNTV VSPDGSLCASGGKD   +LWDL EGK LY
Sbjct:  143 QDDCHTDWTSCVRFSPNTQNPIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLY 228

HSP 2 Score: 62.3882 bits (150), Expect = 1.605e-45
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS DNRQIVS SRD+TIKLWNT
Sbjct:  103 GHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT 134

[Close]

BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.092e-45
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 3

Query:  126 EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 383
            + + HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY
Sbjct:  143 QDEGHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 228

HSP 2 Score: 62.3882 bits (150), Expect = 2.092e-45
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1

Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 96
            GHTKDVLSVAFS DNRQIVS SRD+TIKLWNT
Sbjct:  103 GHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT 134

The following BLAST results are available for this feature:

BLAST of CF504464 vs. ExPASy Swiss-Prot

BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86


Match Name	E-value	Identity	Description
GBLP_SOYBN	1.314e-57	92.05	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_MEDSA	6.450e-57	90.91	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_ARATH	9.378e-57	89.41	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_NICPL	2.027e-55	88.64	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_BRANA	2.884e-55	88.24	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_TOBAC	4.491e-55	87.50	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_CHLRE	4.727e-48	75.00	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_DANRE	5.564e-46	72.09	Guanine nucleotide-binding protein subunit beta-2-...	[more]
GBLP_BIOGL	1.605e-45	72.09	Guanine nucleotide-binding protein subunit beta-2-...	[more]
GBLP_ORENI	2.092e-45	70.93	Guanine nucleotide-binding protein subunit beta-2-...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-953 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bp
GGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTCA
GATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACCGCTC
GGCGAGTGCAAGTACACCGATTCAAGAGGGAGACGCTCACACTGAGTGGG
TTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCC
GCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCT
TAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGT
CGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTG
TTGTGGGATTTGGCTGAGGGAAAAAGACTCTACT