CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.744e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRKKS EEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  338 SSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.466e-22
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMRKKS EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  343 SSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.236e-21
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.236e-21
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAE+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.615e-21
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRK+SAE+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  341 SSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.615e-21
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRK+SAE+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  341 SSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.615e-21
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK+SAEE +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  342 SSACVLFILDEMRKRSAEEGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRKK AEE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  340 SSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMRKKS EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  342 SSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 164
            SSACVLFILDEMRK  AEE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  340 SSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS2_CITSI7.744e-2498.15Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR9.466e-2296.08Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS4_SORBI1.236e-2192.31Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS2_MAIZE1.236e-2192.31Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHSY_ORYSJ1.615e-2188.89Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI1.615e-2188.89Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS7_SORBI1.615e-2192.31Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS2_RUTGR2.109e-2190.74Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_DAUCA2.109e-2194.12Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_RUTGR2.109e-2190.74Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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