CF504530

Overview
NameCF504530
Unique NameCF504530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.745e-23
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ
Sbjct:    2 GAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.133e-21
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.639e-21
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ
Sbjct:    2 GAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_SILME (60S ribosomal protein L15 OS=Silurus meridionalis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G + ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GASKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
The following BLAST results are available for this feature:
BLAST of CF504530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_PETHY1.745e-2391.0760S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH6.631e-2387.5060S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH6.631e-2387.5060S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA2.133e-2180.3660S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA3.639e-2180.3660S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_SILME2.207e-1873.2160S ribosomal protein L15 OS=Silurus meridionalis ... [more]
RL15_MYLPI2.207e-1875.0060S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_CTEID2.207e-1875.0060S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_RAT2.883e-1873.2160S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB2.883e-1873.2160S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-019 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504530 ID=CF504530; Name=CF504530; organism=Citrus sinensis; type=EST; length=226bp
AAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAGCTCAGCTCATAG
CCAATGGGGGCTTACACCGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGG
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