CF504566

Overview
NameCF504566
Unique NameCF504566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.958e-62
Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = 2
Query:  134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            V  +P K ++D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSN
Sbjct:    9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSN 147          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 6.475e-62
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 2
Query:  134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            VP++  K ++D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSN
Sbjct:    9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSN 147          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.159e-61
Identity = 106/139 (76.26%), Postives = 116/139 (83.45%), Query Frame = 2
Query:  134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            VP    K + DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSN
Sbjct:    9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSN 147          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.676e-58
Identity = 97/128 (75.78%), Postives = 110/128 (85.94%), Query Frame = 2
Query:  167 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+FY IA TY H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSN
Sbjct:   25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSN 151          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.075e-52
Identity = 86/133 (64.66%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  152 KVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            +    PL       PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA++FY++AD YI  LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+N
Sbjct:    8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHAN 140          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2
Query:  194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHH 152          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2
Query:  194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHH 152          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.363e-27
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P ++PPF +  ++ AIP HC+ +S LRS SYVV D+ IA     IA  Y+       S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N
Sbjct:   28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQN 143          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF L++++  IP HC+ +  LRS SYVV D+        IA        H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH+ HH N
Sbjct:   24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQN 139          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P ++PPF +  ++ AIP HC+ +S LRS SYV  D+  A     +A  Y        S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N
Sbjct:   25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQN 140          
The following BLAST results are available for this feature:
BLAST of CF504566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
FAD6E_BRAJU4.958e-6272.66Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH6.475e-6271.94Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN7.159e-6176.26Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN9.676e-5875.78Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL6.075e-5264.66Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS2.400e-3253.39Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP2.400e-3253.39Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_ARATH1.363e-2746.34Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC2.570e-2643.90Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.666e-2543.09Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-055 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504566 ID=CF504566; Name=CF504566; organism=Citrus sinensis; type=EST; length=552bp
CTCACAACGCGGCCGGCGAAGGCGAGAAAGAGAGAGGGAGAGAAAGTGAG
GTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGTGCTTCGCTTCTTCAGGT
TGACGAACAATGGGTGCAGGTGGACGAATGGCTGTACCTTCAACGCCCAT
GAAGGTGGATTCTGATCCCTTGAAGCGAGTTCCATGCTCAAAGCCACCAT
TCACACTCAGCCAAGTAAAGAAAGCTATCCCACCTCACTGTTTTGAGCGG
TCTGTTCTCCGTTCATTCTCCTACGTTGTTCATGACCTCACCATTGCCTT
TGTCTTTTACTACATTGCCGACACTTACATTCACCAACTTCCTCACCCTC
TCTCTTATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAGGCTGCATTTTA
ACTGGAGTTTGGGTTGTAGCTCATGAATGTGGCCACCATGCCTTCAGTGA
CTATCAATGGCTTGACGACACTGTTGGCCTTATCCTCCACTCTTGCCTCC
TTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCCATCACTCCAAT
AC
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