CF504566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 4.958e-62 Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = 2 Query: 134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 V +P K ++D LKRVPC PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A FYY+A TY LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSN Sbjct: 9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSN 147
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 6.475e-62 Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 2 Query: 134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 VP++ K ++D KRVPC KPPF++ +KKAIPPHCF+RS+ RSFSY++ D+ IA FYY+A Y LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSN Sbjct: 9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSN 147
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 7.159e-61 Identity = 106/139 (76.26%), Postives = 116/139 (83.45%), Query Frame = 2 Query: 134 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 VP K + DPLKRVP KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF YY+A Y H LP PLS+ +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSN Sbjct: 9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSN 147
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 9.676e-58 Identity = 97/128 (75.78%), Postives = 110/128 (85.94%), Query Frame = 2 Query: 167 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+FY IA TY H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSN Sbjct: 25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSN 151
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 6.075e-52 Identity = 86/133 (64.66%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 152 KVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 + PL PPFT+S +K+AIPPHCF+RSV+RS Y+VHD IA++FY++AD YI LP PL+YLAWP+YW Q ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+N Sbjct: 8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHAN 140
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32 Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2 Query: 194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544 P FT+ ++++ IP HCFERS LR +V DLT A + + +A T I + +PL YLAWP YW +QG + TG+WV+AHECGH +FS + L++TVG ILHS LLVPY SW+ SH +HH Sbjct: 36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHH 152
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32 Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2 Query: 194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544 P FT+ ++++ IP HCFERS LR +V DLT A + + +A T I + +PL YLAWP YW +QG + TG+WV+AHECGH +FS + L++TVG ILHS LLVPY SW+ SH +HH Sbjct: 36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHH 152
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.363e-27 Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P ++PPF + ++ AIP HC+ +S LRS SYVV D+ IA IA Y+ S+ WP+YWA QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N Sbjct: 28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQN 143
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26 Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF L++++ IP HC+ + LRS SYVV D+ IA H S+L +P+YWA+QG + ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY W+ SH+ HH N Sbjct: 24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQN 139
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25 Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P ++PPF + ++ AIP HC+ +S LRS SYV D+ A +A Y S+ WP+YW QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N Sbjct: 25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQN 140 The following BLAST results are available for this feature:
BLAST of CF504566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504566 ID=CF504566; Name=CF504566; organism=Citrus sinensis; type=EST; length=552bpback to top |