CF504602

Overview
NameCF504602
Unique NameCF504602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504602 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 2 
Query:    2 KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQK-MAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGP 421
            K+   P +     V  ++  S  R+++  +D+ Q HW   + N GYLD L    D  E+G +K V ++N+  +RLR   E     GIP+ SNQV +S++   P+Q  +   C   GV LI Y  +  G L+ K+   N   P +GP
Sbjct:  144 KFAALPWRFGRESVVTALKDSLSRLELSSVDLYQLHWPGLWGNEGYLDGLG---DAVEQGLVKAVGVSNYSEKRLRDAYERLKKRGIPLASNQVNYSLIYRAPEQTGVKAACDELGVTLIAYSPIAQGALTGKYTPEN---PPSGP 283
The following BLAST results are available for this feature:
BLAST of CF504602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1669_ARATH2.638e-1232.88Uncharacterized oxidoreductase At1g06690, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-091 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504602 ID=CF504602; Name=CF504602; organism=Citrus sinensis; type=EST; length=485bp
TAAATGGGTACCTCCACCAGTCAAGATGACAAGTAGCATTGTTAGAGAGA
GCATCGATGTATCAAGGAGGCGGATGGATGTACCTTGCTTGGACATGCTT
CAATTTCATTGGTGGGATTATTCTAATCCTGGTTACCTTGATGCACTAAA
TCACCTTACAGATCTGAAAGAAGAAGGTAAAATTAAGACTGTTGCTTTGA
CAAATTTTGACACGGAAAGACTGCGAATAATACTGGAGAATGGTATCCCT
GTTGTTAGCAATCAGGTGCAACATTCAGTTGTTGACATGCGTCCCCAGCA
GAAAATGGCAGAGCTTTGTCAGCTCACAGGAGTCAAACTAATAACGTATG
GCACAGTAATGGGTGGTTTGTTATCTGAAAAGTTCCTTGACACCAACTTG
TCGATTCCTTTTGCTGGCCCCCCATTGAACACTCCGTCCCTTCACAAGTA
CAAAAGGATGGTTGATGCCTGGGGAGGGTGGAGTC
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