CF504603

Overview
NameCF504603
Unique NameCF504603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504603 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17
Identity = 58/127 (45.67%), Postives = 72/127 (56.69%), Query Frame = 3 
Query:  108 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGG 455
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY G
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAG 133
[Close]
BLAST of CF504603 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 3 
Query:  111 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPAPQTAQMTIFYGG 455
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S    A   + +   +FP+Q+ F+  + +    D  +        KP  Q+A +TIFYGG
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMDSS----AGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGG 126
The following BLAST results are available for this feature:
BLAST of CF504603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10A_ARATH3.044e-1745.67Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH1.414e-1441.80Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-092 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504603 ID=CF504603; Name=CF504603; organism=Citrus sinensis; type=EST; length=457bp
ACTAGTTTTATTTTTAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGA
GTTGGTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAAC
CTTGCCGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGT
ACTTGAAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGC
AACATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTAC
AACTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAG
CTCGAAACATGGCAGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCT
CAACAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTC
AAGTTTAAACAAGCCCGCTCCGCAAACTGCTCAAATGACTATATTTTATG
GCGGACA
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