CF504610

Overview
NameCF504610
Unique NameCF504610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504610 vs. ExPASy Swiss-Prot
Match: TAF1A_ARATH (Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.228e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 2
Query:   98 EKPREEELLQXXXXXXXPEIGDDYLEDYRAKRNDRRMLERDRGAKRKPGAELGKHSADYGPPTKRRRGGKVGLSNILQRIVETLRENTELSYLYLKPVAKKEAPDY 415
            E+ R++   +       PEI + YLEDY  ++NDRR+ ER R  + +  ++  +  A+Y P  KRR+ G+VGL+NIL+RIV+TLR   E+S L+LKPV+KKEAPDY
Sbjct: 1731 EEERQKAKKKKKKKKLQPEIVEGYLEDYPPRKNDRRLSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDY 1836          
BLAST of CF504610 vs. ExPASy Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  152 EIGDDYLEDYRAKRNDRRMLERDRGAKRKPGAELGKHSADYGPPTKRRRGGKVGLSNILQRIVETLRENTELSYLYLKPVAKKEAPDY 415
            E  DD L D R  +NDRR+ ER R AKR+  A++     +Y PP KR RGG+V LSNIL++IV+ LR     S+L+ KPV KKEAPDY
Sbjct: 1647 EFRDDDLLDPRPYKNDRRVPERGRAAKRRTPADM----TEYTPPAKRHRGGEVELSNILEKIVDHLR-TMSCSFLFRKPVTKKEAPDY 1729          
BLAST of CF504610 vs. ExPASy Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  170 LEDYRAKRNDRRMLERDRGAKRKPGAELGKHSADYGPPTKRRRGGKVGLSNILQRIVETLR-ENTELSYLYLKPVAKKEAPDY 415
            LE+Y  +RND    E  +       ++  ++  +Y P  KRR+ G+VGL+NIL+ IV+TLR +   +SYL+LKPV KKEAP+Y
Sbjct: 1617 LENYPPRRNDGISSESGQNINSLCVSDFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNY 1699          
The following BLAST results are available for this feature:
BLAST of CF504610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TAF1A_ARATH1.228e-2147.17Transcription initiation factor TFIID subunit 1-A ... [more]
TAF1_ORYSJ2.029e-1653.41Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1B_ARATH1.361e-1244.58Transcription initiation factor TFIID subunit 1-B ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-099 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504610 ID=CF504610; Name=CF504610; organism=Citrus sinensis; type=EST; length=415bp
AAAGAAGAAAGGGCAAGGAGGATTTATGAGGAAGAAAGGAGGTTTGTGGA
AGAGCGGGAAAGGTTTGCTGAACTTAGGAGGTATGAAGAATCCATCAGAA
AAGCCGAGAGAGGAAGAACTCCTCCAAAAAGCAAAGAAGAAGAAAAAACC
TGAAATAGGAGATGATTATTTAGAGGACTACAGGGCTAAAAGAAATGATA
GAAGGATGCTAGAAAGAGATCGAGGTGCAAAGAGGAAACCTGGCGCAGAG
TTGGGAAAGCACAGTGCAGATTATGGACCTCCGACAAAGCGACGCAGAGG
GGGAAAGGTTGGTCTGTCAAACATATTACAGCGCATTGTAGAGACCCTCC
GAGAAAATACTGAGTTGTCATATCTCTACCTTAAACCAGTGGCCAAGAAA
GAAGCTCCTGATTAC
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