CF504615

Overview
NameCF504615
Unique NameCF504615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.805e-28
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 394
            +SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 2 
Query:   53 QTKKRQIHRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 394
            + KK    RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   85 EEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  168 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.009e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.009e-24
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 2 
Query:   53 QTKKRQIHRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 394
            + KK    RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   85 EEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.339e-23
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:   77 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 373
            RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
[Close]
BLAST of CF504615 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.677e-23
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:   74 HRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 370
            HRSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  146 HRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
The following BLAST results are available for this feature:
BLAST of CF504615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PAB2_SCHPO1.805e-2861.61Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
EPA2B_XENLA3.523e-2447.93Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
PABP2_MOUSE4.601e-2456.00Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN4.601e-2456.00Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN4.601e-2456.00Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA4.601e-2456.00Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA6.009e-2456.00Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
EPA2A_XENLA6.009e-2447.93Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PABP2_XENTR1.339e-2355.00Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
EPAB2_HUMAN8.677e-2353.00Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-104 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504615 ID=CF504615; Name=CF504615; organism=Citrus sinensis; type=EST; length=425bp
GAGAGAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCTAATCA
AGCAAACAAAGAAGAGGCAGATTCACCGATCAGTCTTTGTTGGCAATGTA
GATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCTGTGG
TACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCAAAGG
GTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGCTCTC
CAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTGCCTAA
GAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGGCGTTTCAATC
CTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCCTTATTTCTAT
TCACCTTATGGATATGGGAAGGGTC
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