CF504622

Overview
NameCF504622
Unique NameCF504622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504622 vs. ExPASy Swiss-Prot
Match: C3H13_ORYSJ (Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.499e-21
Identity = 60/170 (35.29%), Postives = 87/170 (51.18%), Query Frame = 2 
Query:   74 RDKLDRRLSPQKIYSPGRDTRGR---------NRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKISDGIDDRVKERKFTPSDSXXXXXXXXXXXXXDINVLEDRKLQLETNEEEKGQEADILSSRIXXXXXXXXXXXXXXXRIASKIKKFVKAHNRHSQMQDELK 556
            R ++DRR SP++ +SPGR++RG          +R R  S SRSP  KS+R+  KK   DG    S SL +SD  D++ K+ KF+  D              D+  L D K Q+E   +EK  E   +SS++               R+ SK+KKF+KAH R  + Q+E+K
Sbjct:   63 RGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTD-DGETNSSRSLSLSDNNDEKKKD-KFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVK 230

HSP 2 Score: 29.6462 bits (65), Expect = 1.499e-21
Identity = 14/32 (43.75%), Postives = 16/32 (50.00%), Query Frame = 1 
Query:    1 HGDAELRRP------FRSHHGGPDYRVGDLEG 78
            HG  ++RRP      F  H G  DYR GD  G
Sbjct:   33 HGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRG 64
[Close]
BLAST of CF504622 vs. ExPASy Swiss-Prot
Match: C3H40_ARATH (Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana GN=At3g21810 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.747e-18
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 2 
Query:   71 LRDKLDRRLSPQKIYSPGRDTRGRNRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKISDGIDDRVKERKFTPSDSXXXXXXXXXXXXXDINVLEDRKLQLETNEEEKGQEADILSSRIXXXXXXXXXXXXXXXRIASKIKKFVKAHNRHSQMQDELK 556
            LRD+L R+ SP++  S  R  R   RF G   S   EN+ D+   + +  D  R+++  LK+ + I+DR ++ +                   D+ +L D KL+LE + E K  E DIL+SRI               RI S  KKFVK +NR  + QD+LK
Sbjct:   65 LRDRLGRQFSPERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLKVGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTSRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLK 226

HSP 2 Score: 23.0978 bits (48), Expect = 8.747e-18
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1 
Query:    1 HGDAELRRPFRSHHGG 48
            HG+AELRRP  S   G
Sbjct:   30 HGNAELRRPGESSFTG 45
The following BLAST results are available for this feature:
BLAST of CF504622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H13_ORYSJ1.499e-2135.29Zinc finger CCCH domain-containing protein 13 OS=O... [more]
C3H40_ARATH8.747e-1833.33Zinc finger CCCH domain-containing protein 40 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-111 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504622 ID=CF504622; Name=CF504622; organism=Citrus sinensis; type=EST; length=558bp
CATGGAGACGCTGAGCTTCGCCGCCCTTTCCGCTCCCATCACGGTGGGCC
GGACTACCGAGTTGGTGACCTTGAGGGATAAGCTTGACAGAAGGCTGTCT
CCACAGAAAATTTATTCCCCTGGAAGAGATACTAGAGGCCGGAATAGATT
TCGTGGACTTAGCCCTTCGAGGTCCCCTGAGAATAAAAGTGATAGAAAAC
GCTGGAAGAAACAGCACCTTGATGGGCCAAGAGAATTTTCTGCAAGTCTG
AAAATCTCAGATGGGATTGATGATAGAGTTAAAGAACGAAAATTTACACC
TTCTGATTCCAAAGTTGTTCTTCTGGAGCAGTTAAAAGAAGTGCAGTTGG
ATATCAACGTGCTTGAGGACCGCAAACTTCAATTGGAGACTAATGAGGAG
GAGAAGGGTCAAGAAGCAGATATTCTTTCTTCTAGAATAAAGGAGCTCGA
GACTCAATTGCAGAAAGAGAAAGAGGAATCTAAAAGGATAGCTTCAAAAA
TCAAGAAGTTTGTCAAAGCACATAATCGTCACTCACAGATGCAAGATGAG
CTTAAGAG
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