CF504628

Overview
NameCF504628
Unique NameCF504628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504628 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.541e-19
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   49 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVG 264
            M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKRIEYSLQYIHG+G
Sbjct:    1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIG 72
The following BLAST results are available for this feature:
BLAST of CF504628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RR13_ARATH7.541e-1962.5030S ribosomal protein S13, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-117 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504628 ID=CF504628; Name=CF504628; organism=Citrus sinensis; type=EST; length=264bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAACAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGG
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