CF504633

Overview
NameCF504633
Unique NameCF504633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: TM167_DROME (Transmembrane protein 167 homolog OS=Drosophila melanogaster GN=CG14199 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.886e-16
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  122 SALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIFF 340
            SALFNFHS L+V+LL ICTC Y++  FP++++ ++TGF G FWK ARI    GER SPWV   C  M  +++F+
Sbjct:    4 SALFNFHSLLSVILLLICTCAYLRSLFPSLIDRNKTGFMGTFWKLARI----GERKSPWVGAACLIMAFTVLFW 73          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_DANRE (Transmembrane protein 167A OS=Danio rerio GN=tmem167a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.596e-15
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ ++TGF G FWK ARI    GER SP+VA  C  M L+I+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLTPSLLDKNKTGFLGIFWKCARI----GERKSPYVAFCCIVMALTILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_MOUSE (Transmembrane protein 167A OS=Mus musculus GN=Tmem167a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.085e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P+IL+ ++TG  G FWK ARI    GER SP+VA+ C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSILDRNKTGLLGIFWKCARI----GERKSPYVAICCIVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_PONAB (Transmembrane protein 167A OS=Pongo abelii GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARI----GERKSPYVAVCCIVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_HUMAN (Transmembrane protein 167A OS=Homo sapiens GN=TMEM167A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARI----GERKSPYVAVCCIVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_BOVIN (Transmembrane protein 167A OS=Bos taurus GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARI----GERKSPYVAVCCIVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_CHICK (Transmembrane protein 167A OS=Gallus gallus GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.556e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDKNKTGLLGIFWKCARI----GERKSPYVAVCCVVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_TAEGU (Transmembrane protein 167A OS=Taeniopygia guttata GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S LTV+LL ICTC YI+   P++L+ +++G  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDKNKSGLLGIFWKCARI----GERKSPYVAVCCVVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_XENTR (Transmembrane protein 167A OS=Xenopus tropicalis GN=tmem167a PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S L V+LL ICTC Y++   P +L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLIVILLLICTCAYLRALVPNLLDKNKTGILGIFWKCARI----GERKSPYVAVCCVVMAFSILF 70          
BLAST of CF504633 vs. ExPASy Swiss-Prot
Match: T167A_XENLA (Transmembrane protein 167A OS=Xenopus laevis GN=tmem167a PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  119 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILE-HRTGFRGFFWKAARIDAETGERLSPWVAVGCFSMGLSIIF 337
            MSA+FNF S L V+LL ICTC Y++   P +L+ ++TG  G FWK ARI    GER SP+VAV C  M  SI+F
Sbjct:    1 MSAIFNFQSLLIVILLLICTCAYLRSLVPNLLDKNKTGVLGIFWKCARI----GERKSPYVAVCCVVMAFSILF 70          
The following BLAST results are available for this feature:
BLAST of CF504633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TM167_DROME1.886e-1652.70Transmembrane protein 167 homolog OS=Drosophila me... [more]
T167A_DANRE1.596e-1556.76Transmembrane protein 167A OS=Danio rerio GN=tmem1... [more]
T167A_MOUSE2.085e-1556.76Transmembrane protein 167A OS=Mus musculus GN=Tmem... [more]
T167A_PONAB2.723e-1556.76Transmembrane protein 167A OS=Pongo abelii GN=TMEM... [more]
T167A_HUMAN2.723e-1556.76Transmembrane protein 167A OS=Homo sapiens GN=TMEM... [more]
T167A_BOVIN2.723e-1556.76Transmembrane protein 167A OS=Bos taurus GN=TMEM16... [more]
T167A_CHICK3.556e-1556.76Transmembrane protein 167A OS=Gallus gallus GN=TME... [more]
T167A_TAEGU1.035e-1455.41Transmembrane protein 167A OS=Taeniopygia guttata ... [more]
T167A_XENTR5.135e-1454.05Transmembrane protein 167A OS=Xenopus tropicalis G... [more]
T167A_XENLA6.707e-1454.05Transmembrane protein 167A OS=Xenopus laevis GN=tm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-122 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504633 ID=CF504633; Name=CF504633; organism=Citrus sinensis; type=EST; length=448bp
GAAAAAGAACAAATTAATCTCGCCGTTGGACATTCGGAGAGCACTTTGGA
ATTCGTTATCATTCATTCTAAACTCGACGATCTGAAGGAGAAGTAATCAA
ATTAAGGAGATCGCAGGCATGTCGGCACTCTTCAATTTCCATTCCTTTCT
GACGGTTGTCCTGTTGGGGATTTGTACGTGCACTTATATAAAGATGCAAT
TTCCAGCAATTCTTGAACATAGAACTGGGTTTCGTGGTTTCTTCTGGAAA
GCAGCTAGGATTGATGCTGAAACAGGTGAGCGTTTGAGCCCCTGGGTCGC
TGTCGGATGCTTTTCGATGGGGCTTTCAATAATCTTTTTCTGACAAAGAA
ACATCTTGTTTATTTAGAAGTAAGGTCCTTCTTCTTACCATTTCTGGTAT
TTTATGTATATGTCAGCAAATGTGTACTTCCTTGAAATTCAATATTAT
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