CF504641

Overview
NameCF504641
Unique NameCF504641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.168e-44
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+Y
Sbjct:    1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.404e-44
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+Y
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.054e-43
Identity = 85/109 (77.98%), Postives = 100/109 (91.74%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ EANAQ+Y
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 4.575e-43
Identity = 88/109 (80.73%), Postives = 95/109 (87.16%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+Y
Sbjct:    1 MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.019e-42
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+Y
Sbjct:    1 MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.606e-42
Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 1
Query:  181 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NNSVK TI+RYKKA  D+ NT S+ EANAQFY
Sbjct:   11 LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFY 106          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.183e-40
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 1
Query:  199 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVKST++RYKKA +DTSN+G++ E NAQ Y
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHY 90          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.289e-37
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 1
Query:  157 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I EAN Q+Y
Sbjct:    2 EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYY 105          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.199e-37
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 1
Query:  157 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            E      +    +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  S+ EAN Q+Y
Sbjct:    2 EEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYY 105          
BLAST of CF504641 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.872e-37
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1
Query:  142 MAFPNELAAGREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY 468
            +A P    +G        K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+L+VFSSRGRLYEYSNNSVK TI+RYKKA +DTSN  ++ E NAQ Y
Sbjct:   23 VASPGSGGSGGSGSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHY 132          
The following BLAST results are available for this feature:
BLAST of CF504641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AG_PETHY3.168e-4480.73Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC5.404e-4480.73Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC2.054e-4377.98Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_BRANA4.575e-4380.73Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH1.019e-4279.82Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_PANGI6.606e-4285.42Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MADS3_ORYSJ6.183e-4086.67MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL5_ARATH1.289e-3772.12Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH2.199e-3770.19Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD58_ORYSJ2.872e-3771.82MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-130 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504641 ID=CF504641; Name=CF504641; organism=Citrus sinensis; type=EST; length=469bp
ATTTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATC
CTGCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTA
CATTCCTTTGGTTAGATAGTGAGCAGGTGGTCAAGAAAAGAATGGCGTTT
CCAAATGAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAAT
GGGGAGAGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCC
AAGTGACCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAA
TTATCTGTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCG
CGGCCGCCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACA
GGTACAAGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAA
GCAAATGCTCAGTTCTACC
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