CF504647

Overview
NameCF504647
Unique NameCF504647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504647 vs. ExPASy Swiss-Prot
Match: HSDD3_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 66/188 (35.11%), Postives = 90/188 (47.87%), Query Frame = 2 
Query:   32 YSRDFNE------QSKVEKLLGGGKVADILLWKDEKKXXXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXXXGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSKLML-QSFTWSIGXXXXXXXXXXXXYEQYEPEIDGLAKFLFNYL 574
            +SRD  +      QS  ++LLG GKVADILLW++EKK                  G                   G   +PS IFGF V +I P  FE+SE+ ++D  + I  +WN G R+ + L+ G DW  FFK+AGSLYL KL++ +S    +             YEQYE E+  LA+     L
Sbjct:  354 FSRDLEKSDDTIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIFAVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGDWIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELELYHLARIFVECL 541
[Close]
BLAST of CF504647 vs. ExPASy Swiss-Prot
Match: HSDD2_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 54/178 (30.34%), Postives = 72/178 (40.45%), Query Frame = 2 
Query:   56 SKVEKLLGGGKVADILLWKDEKKXXXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXXXGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSKLMLQSFTWSI-GXXXXXXXXXXXXYEQYEPEIDGLAKFLFNYLKKSK 586
            SK  ++LGGGKVAD LLWKD K+                  G                    +GILP  IFG+ V++I  S F LS+    D    +   WN   + +R L +G+DW+ FFKV   L    L       SI              YE+ E EID +     ++  K K
Sbjct:  373 SKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALLVASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQGNDWSFFFKVVFVLLALSLAGAISLHSIFVIGLPIAFLAFLVYEKKEQEIDSIVVSFKSFACKHK 550
The following BLAST results are available for this feature:
BLAST of CF504647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HSDD3_ARATH1.225e-2235.113beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
HSDD2_ARATH1.960e-1230.343beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-136 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504647 ID=CF504647; Name=CF504647; organism=Citrus sinensis; type=EST; length=693bp
CTCTCATTTAGCCAGGGACTCCTCTTTAGCTTATTCCAGAGACTTTAATG
AACAATCAAAAGTGGAGAAGCTACTAGGCGGAGGGAAAGTTGCAGACATT
TTGCTGTGGAAAGATGAGAAGAAAACATTTACATACTTCCTTGTTCTGGT
TCTGTTATTTTATTGGTTTTTTCTTGGTGGAAGTACTTTGACCTCATCTG
CAGCCAAGTTTCTTTTGCTGCTTTCTGCTGTCCTTTTTGGATATGGCATT
TTACCATCAAACATATTTGGCTTCAATGTTAAGCGCATATCTCCATCTTG
TTTTGAACTTTCAGAAACAGTGATAAAAGATTCAATTGCAAGAATAGCAT
TTTTGTGGAACATGGGGTTTCGGAATATAAGATTGTTGGCTAAAGGAGAT
GATTGGAATACCTTCTTCAAGGTTGCAGGTTCTCTTTATCTTTCCAAATT
GATGTTGCAGTCCTTCACTTGGTCAATTGGCTTAGCTCTGGTTTTTGCAT
TCACTGCATTCTTCGTTTATGAACAATATGAACCGGAGATTGATGGATTA
GCAAAATTCTTGTTCAACTATTTGAAAAAGTCAAAGGTGTCGTTGATAAG
AAATGTACCCGCTCCAGTTGTGTCATTTCTCTATGACTAGCAGATCCTGC
ATGAACATAAAGCACCTGCTGAGGGGAAATGATCGGAAGCGGC
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